Published July 11, 2023
| Version v1
Software
Open
Repositories for the analysis of T2T-Y and T2T-CHM13v2.0
Creators
- 1. Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA
Description
T2T-Y_Repositories.tar holds repositories for the analysis of T2T-Y and T2T-CHM13v2.0, as in Rhie et al. 2023 (https://doi.org/10.1101/2022.12.01.518724).
- Custom codes developed for data analysis and visualization: https://github.com/arangrhie/T2T-HG002Y (v1.0)
- Assembly string graph construction and resolution: https://github.com/snurk/sg_sandbox (commit ver. 19ee5e306f83f8eb5f5a6ac6a3477e2f925b375e)
- 1KGP and SGDP short-read variant calling: https://github.com/schatzlab/t2t-chm13-chry (v1.0.0)
- Resources available for T2T-CHM13v2.0 as a reference: https://github.com/marbl/CHM13 (commit b03d42d)
- Known issues in T2T-CHM13v2.0: https://github.com/marbl/CHM13-Issues (v2.0)
Files
Files
(12.4 MB)
| Name | Size | Download all |
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md5:333959f4ddb41019e373344847e6c88e
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12.4 MB | Download |