I'm Nishat Fatima Mohammad, a passionate Bioinformatician with medical background. I have strong interests in using my skills in Bioinforamtics, Machine Learning and Artificial Intelligence, and cloud-based automation to find solutions to medical ailments contributing to human suffering.
- Description: To Classify and predicat Lung cancer cases using Random Forest, SVM, ANN, Decision Trees
- Technologies, Tools, Databases: R, HPCC, ML Algorithms, HTML, LaTex, TCGA
- Link: https://github.com/NishatMohammad/HeterogenousMLModelLungCancerPrediction
- Description: Predict Diabetes Mellites using simple ML algorithms
- Technologies, Tools, Databases: R, HPCC, KNN, HTML, LaTex, Kaggle
- Link: https://github.com/NishatMohammad/ApplyKNNforDiabetesCasePrediction
3. Understanding Interactions between Transcription Factors and Histone Modification in Lymphoblastoid Cell Line through ChIP-Seq Analysis
- Description: To explore the interactions between transcription factors and histone modifications in a lymphoblastoid cell line using ChIP-Seq analysis, aiming to understand gene regulation mechanisms.
- Technologies, Tools, Databases: R, ChIP-Seq, Bioconductor, UCSC Browser, ENCODE, HPCC, HTML, LaTex,
- Link: https://github.com/NishatMohammad/ChIPSeqLymphobalstoidCellLine
- Description: To analyze and unveil the the role of SALL2 gene in Mammalian Immune response to infections using a streamlined modrn pipeline.
- Technologies, Tools, Databases: Python, Bash, R, HPCC, FASTQC, MultiQC, HISAT2, DESeq2, HTML, SRA
- Link: https://github.com/NishatMohammad/BINF6430Group3ProjectOnTrancriptomics
- Programming Languages: Python, R, Bash, Linux, Groovy, DSL2
- Bioinformatics Frameworks: Biopython, Bioconda, Galaxy, Snakemake, Nextflow, Tidyverse, R/Bioconductor, GATK, UCSC Genome Browser, ClustalW/Clustal Omega,
- ML/AI Frameworks: TensorFlow, Keras, PyTorch, Scikit-learn, XGBoost, LightGBM, CatBoost, caret,LLM, SLM, RAG, BioGPT.
- Tools: Git, GitHub, Docker, Jupyter, RStudio, RSHINY, Seqera
- Other Skills: NGS Data Analysis, Machine Learning, GWAS, WGS, WES, ChIP-Seq, RNA-Seq, Multi-Omics Integration
Feel free to reach out to me for collaboration, project inquiries, or just to connect!
- Email: mohammad.ni@northeastern.edu
- LinkedIn:https://www.linkedin.com/in/nishat-fatima-mohammad/
- GitHub Repos: https://github.com/NishatMohammad?tab=repositories
- Portfolio: https://nishatmohammad.github.io