Closed
Description
Here is a partial error message:
Using directories as sample names.
Using samples:
1TRUE
1
── Column specification ────────────────────────────────────────────────────────
cols(
Name = col_character(),
Length = col_double(),
EffectiveLength = col_double(),
TPM = col_double(),
NumReads = col_double()
)
Removing 0 transcripts less than 0 bp.
Reading gene and transcript annotations.
Summarizing hg38.fa transcripts...
Writing isoform level tables...
Error in txi$abundance[tx.idx, ] : incorrect number of dimensions
Calls: Summarize ... <Anonymous> -> rescaleTPM -> apply -> as.data.frame
Execution halted
It looks like the tximport matrix no longer has two dimensions.