Lists (3)
Stars
A curated list of awesome network analysis resources.
📊 A universal enrichment tool for interpreting omics data
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
🧬 immunarch [R package] – Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
Create timecourse "fish plots" that show changes in the clonal architecture of tumors
Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
Open-source plugins of Hiplot (ORG) visualization platform. Openbiox mirror of https://github.com/openbiox/hiplot-org-plugins.
Limit memory usage of R processes on POSIX systems | Obsolete, use this instead:
A set of scripts and functions for analyzing MeDIP-seq datasets
Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"
A recursive Feature extraction algorithm for robust deconvolution of cell-types mixture from molecular signatures