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pyproject.toml
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[tool]
[tool.poetry]
name = "easyfinemap"
version = "0.4.7"
homepage = "https://github.com/Jianhua-Wang/easy_finemap"
description = "user-friendly pipeline for GWAS fine-mapping."
authors = ["Jianhua Wang <jianhua.mert@gmail.com>"]
readme = "README.md"
license = "MIT"
classifiers = [
'Development Status :: 2 - Pre-Alpha',
'Intended Audience :: Developers',
'License :: OSI Approved :: MIT License',
'Natural Language :: English',
'Programming Language :: Python :: 3',
'Programming Language :: Python :: 3.8',
'Programming Language :: Python :: 3.9',
'Programming Language :: Python :: 3.10',
]
packages = [
{ include = "easyfinemap" },
{ include = "tests", format = "sdist" },
]
[tool.poetry.dependencies]
python = ">=3.9,<3.13"
typer = "^0.7.0"
# black = { version = ">=22.3.0", optional = true }
# isort = { version = "^5.8.0", optional = true }
# flake8 = { version = "^3.9.2", optional = true }
# flake8-docstrings = { version = "^1.6.0", optional = true }
# mypy = { version = "^0.990", optional = true }
# pytest = { version = "^6.2.4", optional = true }
# pytest-cov = { version = "^2.12.0", optional = true }
# tox = { version = "^3.20.1", optional = true }
# virtualenv = { version = "^20.2.2", optional = true }
# pip = { version = "^20.3.1", optional = true }
# twine = { version = "^3.3.0", optional = true }
# pre-commit = { version = "^2.12.0", optional = true }
# toml = { version = "^0.10.2", optional = true }
# bump2version = { version = "^1.0.1", optional = true }
# mkdocs = { version = "^1.4.2", optional = true }
# mkdocs-include-markdown-plugin = { version = "^4.0.3", optional = true }
# mkdocs-material = { version = "^8.5.11", optional = true }
# mkdocs-autorefs = { version = "^0.4.1", optional = true }
# mkdocstrings = { version = "^0.19.1", extras = ["python"], optional = true }
# mkdocs-material-extensions = { version = "^1.1.1", optional = true }
# pandas = "^1.5.2"
# rich = "^13.3.1"
# jupyter = { version = "^1.0.0", optional = true }
# smunger = "0.1.4"
# rpy2 = "3.5.11"
urllib3 = "1.26.15"
pathos = "^0.3.1"
smunger = "^0.1.5"
[tool.poetry.dev-dependencies]
black = "^23.9.1"
isort = "^5.12.0"
flake8 = "^6.1.0"
flake8-docstrings = "^1.7.0"
mypy = "^1.5.1"
pytest = "^7.4.2"
pytest-cov = "^4.1.0"
tox = "^4.11.3"
virtualenv = "^20.24.5"
pip = "^23.2.1"
twine = "^4.0.2"
pre-commit = "^3.4.0"
toml = "^0.10.2"
bump2version = "^1.0.1"
jupyter = "^1.0.0"
mkdocs = "^1.5.3"
mkdocs-include-markdown-plugin = "^6.0.1"
mkdocs-material = "^9.4.2"
mkdocs-autorefs = "^0.5.0"
mkdocstrings-python = "^1.7.0"
mkdocs-material-extensions = "^1.2"
# [tool.poetry.extras]
# test = [
# "pytest",
# "black",
# "isort",
# "mypy",
# "flake8",
# "flake8-docstrings",
# "pytest-cov",
# ]
# dev = [
# "tox",
# "pre-commit",
# "virtualenv",
# "pip",
# "twine",
# "toml",
# "bump2version",
# "jupyter",
# ]
# doc = [
# "mkdocs",
# "mkdocs-include-markdown-plugin",
# "mkdocs-material",
# "mkdocstrings",
# "mkdocs-material-extension",
# "mkdocs-autorefs",
# ]
[tool.poetry.scripts]
easyfinemap = 'easyfinemap.cli:app'
# [tool.black]
# line-length = 120
# skip-string-normalization = true
# target-version = ['py36', 'py37', 'py38']
# include = '\.pyi?$'
# exclude = '''
# /(
# \.eggs
# | \.git
# | \.hg
# | \.mypy_cache
# | \.tox
# | \.venv
# | _build
# | buck-out
# | build
# | dist
# )/
# '''
# [tool.isort]
# multi_line_output = 3
# include_trailing_comma = true
# force_grid_wrap = 0
# use_parentheses = true
# ensure_newline_before_comments = true
# line_length = 120
# skip_gitignore = true
# # you can skip files as below
# #skip_glob = docs/conf.py
[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"