8000 Add EDAM identifiers to Galaxy tools · Issue #127 · RECETOX/galaxytools · GitHub
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Add EDAM identifiers to Galaxy tools #127

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hechth opened this issue Jun 9, 2021 · 2 comments
Closed
11 of 12 tasks

Add EDAM identifiers to Galaxy tools #127

hechth opened this issue Jun 9, 2021 · 2 comments
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@hechth @xtrojak @zargham-ahmad
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documentation Improvements or additions to documentation

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@hechth
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hechth commented Jun 9, 2021 •
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Add EDAM identifiers to tools in order to be detectable on bio.tools.

Other resources:

Tools for which to add identifiers
@hechth hechth added the documentation Improvements or additions to documentation label Jun 9, 2021
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hechth commented Jun 16, 2023 •
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recetox-aplcms

Input Data

  • mass spectrometry data (2536)

Format

  • mzML (3244)

Operation

  • filtering (3937) (noise removal)
  • feature extraction (generate features, recovery)
  • peak detection (3215) (generate features, recovery)
  • chromatographic alignment (3628) (rt correction step)
  • alignment (2928) (alignment step)
  • Qauntification (3799) (generate features, recovery)

Output

  • feature table (1270)
  • alignment (1916)
  • expression data (2603)

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hechth commented Jun 16, 2023 •
edited by zargham-ahmad
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Terms to add

  • Exposomics (topic)
  • peak table (-> expression data)
  • MSP (-> mass spectrometry data format)
  • Parquet format

@hechth hechth closed this as completed Oct 20, 2023
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