8000 Commits · SinaedaA/AURTHO · GitHub

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Commits

Commits on Apr 11, 2025

added .gitignore

Sinaeda Anderssen
authored and
Sinaeda Anderssen
committed
Merge pull request #2 from SinaedaA/snakemake
SinaedaA
authored

Commits on May 25, 2023

Changed the beginning of the workflow to remove tedious bash for loops, and use the python scripts (1_download_genomes.py and 2_make_cds_faa_gff.py
SinaedaA
committed
Changed download_genomes python script, to work with organisms other than bacteria (fungi, plants etc) and enable choosing between RefSeq and GenBank assemblies
SinaedaA
committed
Changed some things in make_cds_faa so it would work on non-RefSeq assemblies
SinaedaA
committed

Commits on Nov 28, 2022

Re-wrote download_genomes and make_cds_faa in py
SinaedaA
committed

Commits on Jun 13, 2022

Add files via upload
SinaedaA
authored

Commits on Apr 1, 2022

Commits on Mar 31, 2022

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