8000 How to get cis-Feature of my data · Issue #21 · Xinglab/DARTS · GitHub
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How to get cis-Feature of my data #21

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WMM1010 opened this issue May 2, 2022 · 3 comments
Open

How to get cis-Feature of my data #21

WMM1010 opened this issue May 2, 2022 · 3 comments

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@WMM1010
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WMM1010 commented May 2, 2022

Exception: no ID could be matched with cis- file; check your Darts-flat ID column or if you supplied the correct cis-feature file.
@zj-zhang
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zj-zhang commented May 3, 2022

Hi @zcpan Have we released the featurization scripts for Darts somewhere, or have plans on releasing?
Basically users should be able to generate their own cis-features given an alternative-splicing event definition (event type, coords, strand) and a genome FASTA file.

@zcpan
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zcpan commented May 3, 2022 •
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Hi @WMM1010, we are planning to add the sequence feature annotation function to DARTS soon. We will keep you posted.

@WMM1010
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WMM1010 commented May 5, 2022

Through your article, I found that the calculation of cis-feature came from the nature literature "Deciphering the splicing code" in 2010 and "The human splicing code reveals new insights into the genetic determinants of disease" in 2015, but their resources have run out.I wonder if their resources remain on Github, if so, can they be shared? Thank you!

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@zcpan @zj-zhang @WMM1010
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