8000 How to view informative genes for each cell type · Issue #76 · YMa-lab/CARD · GitHub
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ghost opened this issue Apr 15, 2024 · 2 comments
Open

How to view informative genes for each cell type #76

ghost opened this issue Apr 15, 2024 · 2 comments

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@ghost
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ghost commented Apr 15, 2024

Excellent work! I noticed that CARD requires the selection of informative genes for each cell type before proceeding with deconvolution. Therefore, I would like to know which genes are identified as informative genes for each cell type. Is it possible to view this gene list along with the corresponding fold changes? Thank you very much.
@Vithuzane
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Hi, I'm having the same question than you. I would like to explore which genes are selected as informative genes for each cell types in the reference scRNAseq matrix.

Is there a way to get this information ?

Thanks a lot for your help !

@GaryZhangYue
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I am having the same question here too! I think it would be helpful to have an option to output the informative gene matrix (or simply place it as a slot in the CARD obj). It is the basis of deconvolution and one of the critical matrix to look for diagnosis purposes.

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