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- 8 commits
- 26 files changed
- 3 contributors
Commits on Jun 13, 2023
Commits on Jun 14, 2023
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added gunc download to local rules
- ensures that gunc data is downloaded from the headnode - avoids error if cluster jobs do have internet access
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added dram download to local rules
- ensures that dram data is downloaded from the headnode - avoids error if cluster jobs do have internet access
Commits on Jun 15, 2023
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Genome dereplication using skani (#663)
* add_skani * add target_rule * skani run * added skani 2 parquet * skani2 parquet tested * species clustering with skani * add info about translation table to cluter species * rename genomes with skani * drop dRep * new bin report ugly * formating * use upercase names as in checkm2 * use upper case for quality headers * fix upercase * fix report * formating * remove drep option from config * make pandas2 ready * formatig * make output of binning, genomes and genecatalog temp * recalibrate quality * formating * move raw bin_finfo to subfolder * path in raw bins
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