8000 Commits · mgildea87/CUT-RUN · GitHub

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Commits

Commits on Jan 17, 2023

submodule update
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Commits on Dec 21, 2022

submodule update
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submodule update
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Commits on May 4, 2022

.
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Commits on Apr 22, 2022

submodule update
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Parameterized chromosome length file and some minor fixes
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Commits on Apr 21, 2022

fixed readme
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submodule update
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Commits on Feb 19, 2022

update submodule
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Commits on Jan 28, 2022

Update submodule
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Add submodule updates
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Merge branch 'main' of https://github.com/mgildea87/CUT-RUN into main
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a
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submodule add'
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Remove submodule
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Remove submodule
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Commits on Aug 31, 2021

Commits on Aug 30, 2021

readme update
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readme update
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readme update
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.
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remove cat_rename.py and snakemake_init.sh from main directory. They are replaced by the cat_rename_init submodule. Update readme
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Add cat_rename_init submodule
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Commits on Aug 5, 2021

Fixed bug with splitting sample names by _. Script didn't account for _ being present except for between column in samples_info.txt
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Commits on Aug 4, 2021

Commits on Jun 23, 2021

updated miniconda and multiqc versions
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Added .bam sort rule
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Commits on Jun 22, 2021

Added bam sort rule
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Commits on Jun 18, 2021

Added fastqc post trimming rule. Removed the feature (GTF) file that isn't used. The pipeline now assumes each antibody sample has it's own control
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Commits on May 11, 2021

minor fix
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minor readme fixes
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