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mskilab-org

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  1. JaBbA JaBbA Public

    MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.

    R 57 27

  2. gGnome gGnome Public

    R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework

    R 40 21

  3. fishHook fishHook Public

    R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after correcting for genomic covariates.

    R 30 9

  4. gGnome.js gGnome.js Public

    JavaScript 26 5

  5. gTrack gTrack Public

    R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework

    R 16 12

  6. dryclean dryclean Public

    Irons out wrinkles in noisy coverage data using robust PCA

    R 15 14

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