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Description
Description of the bug
Good evening,
I am experiencing problems with Sarek's pipeline. When I try to remove the adapters from my WES data, the dragmap tool runs into "Segmentation Fault".
Do you have any idea what the problem might be?
Command line:
nextflow run main.nf
--input sample_sheet_3.csv
--genome GATK.GRCh38
--aligner dragmap
--save_output_as_bam
--step mapping
--outdir './results'
--save_output_as_bam
--wes false
-resume
-profile aws
--trim_fastq
Command used and terminal output
No response
Relevant files
No response
System information
No response