Closed
Description
Description of feature
For some use cases, it would be useful to skip the filtering following Haplotypecaller in the single sample mode:
https://nfcore.slack.com/archives/CGFUX04HZ/p1669759507612189?thread_ts=1665054217.962299&cid=CGFUX04HZ
https://nfcore.slack.com/archives/CGFUX04HZ/p1668784847234849