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nes":null,"stylingDirectives":null,"colorizedLines":null,"csv":null,"csvError":null,"dependabotInfo":{"showConfigurationBanner":false,"configFilePath":null,"networkDependabotPath":"/ngs-docs/angus/network/updates","dismissConfigurationNoticePath":"/settings/dismiss-notice/dependabot_configuration_notice","configurationNoticeDismissed":null},"displayName":"index.md","displayUrl":"https://github.com/ngs-docs/angus/blob/2019/index.md?raw=true","headerInfo":{"blobSize":"8.71 KB","deleteTooltip":"You must be signed in to make or propose changes","editTooltip":"You must be signed in to make or propose changes","ghDesktopPath":"https://desktop.github.com","isGitLfs":false,"onBranch":true,"shortPath":"1664445","siteNavLoginPath":"/login?return_to=https%3A%2F%2Fgithub.com%2Fngs-docs%2Fangus%2Fblob%2F2019%2Findex.md","isCSV":false,"isRichtext":true,"toc":[{"level":1,"text":"Next-Gen Sequence Analysis Workshop (2019)","anchor":"next-gen-sequence-analysis-workshop-2019","htmlText":"Next-Gen Sequence Analysis Workshop (2019)"},{"level":2,"text":"3 Rooms \u0026 lead instructors!","anchor":"3-rooms--lead-instructors","htmlText":"3 Rooms \u0026amp; lead instructors!"},{"level":2,"text":"Schedule, in brief:","anchor":"schedule-in-brief","htmlText":"Schedule, in brief:"},{"level":2,"text":"Second week: July 8-13, 2019.","anchor":"second-week-july-8-13-2019","htmlText":"Second week: July 8-13, 2019."}],"lineInfo":{"truncatedLoc":"163","truncatedSloc":"122"},"mode":"file"},"image":false,"isCodeownersFile":null,"isPlain":false,"isValidLegacyIssueTemplate":false,"issueTemplate":null,"discussionTemplate":null,"language":"Markdown","languageID":222,"large":false,"planSupportInfo":{"repoIsFork":null,"repoOwnedByCurrentUser":null,"requestFullPath":"/ngs-docs/angus/blob/2019/index.md","showFreeOrgGatedFeatureMessage":null,"showPlanSupportBanner":null,"upgradeDataAttributes":null,"upgradePath":null},"publishBannersInfo":{"dismissActionNoticePath":"/settings/dismiss-notice/publish_action_from_dockerfile","releasePath":"/ngs-docs/angus/releases/new?marketplace=true","showPublishActionBanner":false},"rawBlobUrl":"https://github.com/ngs-docs/angus/raw/refs/heads/2019/index.md","renderImageOrRaw":false,"richText":"\u003carticle class=\"markdown-body entry-content container-lg\" itemprop=\"text\"\u003e\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch1 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003eNext-Gen Sequence Analysis Workshop (2019)\u003c/h1\u003e\u003ca id=\"user-content-next-gen-sequence-analysis-workshop-2019\" class=\"anchor\" aria-label=\"Permalink: Next-Gen Sequence Analysis Workshop (2019)\" href=\"#next-gen-sequence-analysis-workshop-2019\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eThese are the schedule and classroom materials for the \u003ca href=\"http://ivory.idyll.org/dibsi/ANGUS.html\" rel=\"nofollow\"\u003eANGUS workshop at UC Davis\u003c/a\u003e, which will run from July 1st to July 13th, 2019. ANGUS is part of the 2019 \u003ca href=\"http://ivory.idyll.org/dibsi/\" rel=\"nofollow\"\u003eData Intensive Biology Summer Institute\u003c/a\u003e.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eThis workshop runs under a \u003ca href=\"/ngs-docs/angus/blob/2019/code-of-conduct.html\"\u003eCode of Conduct\u003c/a\u003e. Please respect it and be excellent to each other!\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eWe hope that we can respect each other by following these \u003ca href=\"/ngs-docs/angus/blob/2019/guidelines-expectations.md\"\u003eguidelines \u0026amp; expectations\u003c/a\u003e.\u003c/p\u003e\n\u003cblockquote\u003e\n\u003cp dir=\"auto\"\u003e\u003cstrong\u003ePlease \u003ca href=\"https://docs.google.com/forms/d/e/1FAIpQLSc1G8J6KQlkkrkVbH5U1H1EdkomFbCS3qzvwlwEyaQSTFHFsg/viewform\" rel=\"nofollow\"\u003esubmit your feedback here\u003c/a\u003e on any aspect of the workshop.\u003c/strong\u003e \u003cem\u003eWe encourage feedback from everyone involved in the workshop in any capacity\u003c/em\u003e\u003c/p\u003e\n\u003c/blockquote\u003e\n\u003cp dir=\"auto\"\u003eTwitter hash tag: \u003ca href=\"https://twitter.com/search?f=tweets\u0026amp;q=%23dibsi2019\u0026amp;src=typd\" rel=\"nofollow\"\u003e#dibsi2019\u003c/a\u003e\u003c/p\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch2 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003e3 Rooms \u0026amp; lead instructors!\u003c/h2\u003e\u003ca id=\"user-content-3-rooms--lead-instructors\" class=\"anchor\" aria-label=\"Permalink: 3 Rooms \u0026amp; lead instructors!\" href=\"#3-rooms--lead-instructors\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003eRoom Mexía will be led by \u003ca href=\"https://twitter.com/rociotmartinez?lang=en\" rel=\"nofollow\"\u003eRocio Martinez-Nunez\u003c/a\u003e and \u003ca href=\"https://twitter.com/ReiterTaylor?lang=en\" rel=\"nofollow\"\u003eTaylor Reiter\u003c/a\u003e, in 1043 Valley.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eRoom Lovelace will enjoy the leadership of \u003ca href=\"https://twitter.com/Powerofcheez?lang=en\" rel=\"nofollow\"\u003eChissa Rivaldi\u003c/a\u003e and \u003ca href=\"https://twitter.com/AstrobioMike?lang=en\" rel=\"nofollow\"\u003eMike Lee\u003c/a\u003e, in 1041 Valley.\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eRoom Conway will be led by \u003ca href=\"https://twitter.com/perisateesh?lang=en\" rel=\"nofollow\"\u003eSateesh Peri\u003c/a\u003e \u0026amp; \u003ca href=\"https://twitter.com/micro_marian?lang=en\" rel=\"nofollow\"\u003eMarian Schmidt\u003c/a\u003e, in 2020 Valley.\u003c/p\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch2 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003eSchedule, in brief:\u003c/h2\u003e\u003ca id=\"user-content-schedule-in-brief\" class=\"anchor\" aria-label=\"Permalink: Schedule, in brief:\" href=\"#schedule-in-brief\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003e\u003cstrong\u003eMonday, July 1st, 2019:\u003c/strong\u003e\u003c/p\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e1:30-2:20pm:\u003c/strong\u003e \u003ca href=\"http://bit.ly/2019_ANGUS_Welcome\" rel=\"nofollow\"\u003eWelcome to ANGUS 2019 slides\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e2:20-2:30pm:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e2:30-3:30pm:\u003c/strong\u003e Room Welcomes\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e3:30-3:45pm:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e3:45pm-5:00pm:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/cloud_computing_intro.md\"\u003eIntroduction to cloud computing and a motivating example\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e5:00pm:\u003c/strong\u003e DONE\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003c/ul\u003e\n\u003cp dir=\"auto\"\u003e\u003cstrong\u003eTuesday, July 2nd, 2019:\u003c/strong\u003e\u003c/p\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e9:00-10:20am:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/shell_intro/index.html\"\u003eIntroduction to the Shell\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e10:20-10:40am:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e10:40am-12:00pm:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/shell_intro/index.html\"\u003eIntroduction to the Shell\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e12:00-1:00pm:\u003c/strong\u003e LUNCH\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e1:00-2:00pm:\u003c/strong\u003e \u003ca href=\"https://twitter.com/monsterbashseq?lang=en\" rel=\"nofollow\"\u003eLisa K Johnson\u003c/a\u003e: \u003ca href=\"https://docs.google.com/presentation/d/1HCGTma7OUTeiepuKQ1h-Sya3L2HLnAAoFGpZO52GPCk/edit#slide=id.p\" rel=\"nofollow\"\u003eIntro to Modern Sequencing Practices\u003c/a\u003e - \u003ca href=\"https://youtu.be/mBVdRRUcqZI\" rel=\"nofollow\"\u003eview recording!\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e2:00-2:10pm:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e2:15-5:00pm:\u003c/strong\u003e Poster session \u0026amp; Ice Cream Social (with dairy-free options!)\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e5:00pm:\u003c/strong\u003e DONE\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003c/ul\u003e\n\u003cp dir=\"auto\"\u003e\u003cstrong\u003eWednesday, July 3rd, 2019:\u003c/strong\u003e\u003c/p\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e9:00-9:15am:\u003c/strong\u003e \u003cstrong\u003eMeet in Lecture Room (1030) for quick meeting\u003c/strong\u003e\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e9:20-10:20am:\u003c/strong\u003e Wrapping up \u003ca href=\"/ngs-docs/angus/blob/2019/shell_intro/index.html\"\u003eIntroduction to the Shell\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e10:20-10:40am:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e10:40am-12:00pm:\u003c/strong\u003e Wrapping up \u003ca href=\"/ngs-docs/angus/blob/2019/shell_intro/index.html\"\u003eIntroduction to the Shell\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e12:00-1:00pm:\u003c/strong\u003e LUNCH\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e1:00-2:00pm:\u003c/strong\u003e \u003ca href=\"https://twitter.com/procrastinomics?lang=en\" rel=\"nofollow\"\u003eAmanda Charbonneau\u003c/a\u003e: How to statistics \u003ca href=\"https://github.com/ngs-docs/angus/blob/2019/StatsNstuff.pdf\"\u003eSlides\u003c/a\u003e - \u003ca href=\"https://www.youtube.com/watch?v=4cndEDLIGVU\u0026amp;feature=youtu.be\" rel=\"nofollow\"\u003eview recording\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e2:00-2:10pm:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e2:15-3:30pm:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/jetstream/boot.md\"\u003eLogging onto the Cloud\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e3:30-3:50pm:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e3:50-5:00pm:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/conda_tutorial.md\"\u003eConda\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e5:00pm:\u003c/strong\u003e DONE\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003c/ul\u003e\n\u003cp dir=\"auto\"\u003e\u003cstrong\u003eThursday, July 4th, 2019\u003c/strong\u003e\u003c/p\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e9:00-10:20am:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/quality-and-trimming.md\"\u003eQuality Control \u0026amp; Adapter Trimming of Sequences\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e10:20-10:40am:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e10:40am-12:00pm:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/quality-and-trimming.md\"\u003eQuality Control \u0026amp; Adapter Trimming of Sequences\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003eBREAK FOR THE DAY - 4th of July Activities\u003c/strong\u003e\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003c/ul\u003e\n\u003cp dir=\"auto\"\u003e\u003cstrong\u003eFriday, July 5th, 2019\u003c/strong\u003e\u003c/p\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e9:00-10:20am:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/finding_resources_online.md\"\u003eFinding resources\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e10:20-10:40am:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e10:50am-12:00pm:\u003c/strong\u003e \u003ca href=\"https://twitter.com/raynamharris?lang=en\" rel=\"nofollow\"\u003eRayna Harris\u003c/a\u003e - \u003ca href=\"https://speakerdeck.com/raynamharris/rnaseq-a-five-course-meal\" rel=\"nofollow\"\u003eRNAseq: a five course meal\u003c/a\u003e - \u003ca href=\"https://www.youtube.com/watch?v=vAPSd2qPdRI\u0026amp;feature=youtu.be\" rel=\"nofollow\"\u003evideo recording\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e12:00-1:00pm:\u003c/strong\u003e LUNCH\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e1:00-2:00pm:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/salmon-quant.md\"\u003eRead Quantification\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e2:00-2:10pm:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e2:15-3:30pm:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/R_Intro_Lesson.md\"\u003eIntroduction to R \u0026amp; RStudio\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e3:30-3:50pm:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e3:50-5:00pm:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/R_Intro_Lesson.md\"\u003eIntroduction to R \u0026amp; RStudio\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e5:00pm:\u003c/strong\u003e DONE\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003c/ul\u003e\n\u003cdiv class=\"markdown-heading\" dir=\"auto\"\u003e\u003ch2 tabindex=\"-1\" class=\"heading-element\" dir=\"auto\"\u003eSecond week: July 8-13, 2019.\u003c/h2\u003e\u003ca id=\"user-content-second-week-july-8-13-2019\" class=\"anchor\" aria-label=\"Permalink: Second week: July 8-13, 2019.\" href=\"#second-week-july-8-13-2019\"\u003e\u003csvg class=\"octicon octicon-link\" viewBox=\"0 0 16 16\" version=\"1.1\" width=\"16\" height=\"16\" aria-hidden=\"true\"\u003e\u003cpath d=\"m7.775 3.275 1.25-1.25a3.5 3.5 0 1 1 4.95 4.95l-2.5 2.5a3.5 3.5 0 0 1-4.95 0 .751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018 1.998 1.998 0 0 0 2.83 0l2.5-2.5a2.002 2.002 0 0 0-2.83-2.83l-1.25 1.25a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042Zm-4.69 9.64a1.998 1.998 0 0 0 2.83 0l1.25-1.25a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042l-1.25 1.25a3.5 3.5 0 1 1-4.95-4.95l2.5-2.5a3.5 3.5 0 0 1 4.95 0 .751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018 1.998 1.998 0 0 0-2.83 0l-2.5 2.5a1.998 1.998 0 0 0 0 2.83Z\"\u003e\u003c/path\u003e\u003c/svg\u003e\u003c/a\u003e\u003c/div\u003e\n\u003cp dir=\"auto\"\u003e\u003cstrong\u003eMonday, July 8th, 2019\u003c/strong\u003e\u003c/p\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e9:00-10:20am:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/R_Intro_Lesson.md\"\u003eIntroduction to R \u0026amp; RStudio cont.\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e10:20-10:40am:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e10:40am-12:00pm:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/R_Intro_Lesson.md\"\u003eIntroduction to R \u0026amp; RStudio cont.\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e12:00-1:00pm:\u003c/strong\u003e LUNCH\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e1:00-2:00pm:\u003c/strong\u003e \u003ca href=\"https://twitter.com/olgabot?lang=en\" rel=\"nofollow\"\u003eOlga Botvinnik\u003c/a\u003e - \u003ca href=\"https://osf.io/gdzuy/\" rel=\"nofollow\"\u003eSingle cell RNAseq (PDF)\u003c/a\u003e - \u003ca href=\"https://www.youtube.com/watch?v=hAqa8DztxSU\u0026amp;feature=youtu.be\" rel=\"nofollow\"\u003evideo recording\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e2:00-2:10pm:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e2:15-3:30pm:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/diff-ex-and-viz.md\"\u003eRNAseq - Differential expression and visualization with R\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e3:30-3:50pm:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e3:50-5:00pm:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/mapping-variant-calling.md\"\u003eMapping \u0026amp; Variant Calling\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e5:00pm:\u003c/strong\u003e DONE\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003c/ul\u003e\n\u003cp dir=\"auto\"\u003e\u003cstrong\u003eTuesday, July 9th, 2019\u003c/strong\u003e\u003c/p\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e9:00-10:20am:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/mapping-variant-calling.md\"\u003eMapping \u0026amp; Variant Calling\u003c/a\u003e and/or \u003ca href=\"/ngs-docs/angus/blob/2019/bash_automation.md\"\u003eAutomation with bash\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e10:20-10:40am:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e10:40am-12:00pm:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/bash_automation.md\"\u003eAutomation with bash\u003c/a\u003e and/or \u003ca href=\"/ngs-docs/angus/blob/2019/snakemake_for_automation.md\"\u003eWorkflow management with Snakemake\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e12:00-1:15pm:\u003c/strong\u003e LUNCH\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e1:15-2:15pm:\u003c/strong\u003e \u003ca href=\"https://twitter.com/IntrprtngGnmcs?lang=en\" rel=\"nofollow\"\u003eShannon Joslin\u003c/a\u003e - \u003ca href=\"https://osf.io/tnwre/\" rel=\"nofollow\"\u003eGenome Assembly\u003c/a\u003e - \u003ca href=\"https://www.youtube.com/watch?v=P-MunQ9Ew1Y\u0026amp;feature=youtu.be\" rel=\"nofollow\"\u003evideo\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e2:15-2:25pm:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e2:25-3:30pm:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/snakemake_for_automation.md\"\u003eWorkflow management with Snakemake\u003c/a\u003e (continued)\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e3:30-3:50pm:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e3:50-5:00pm:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/snakemake_for_qc.md\"\u003eAdding onto our Snakemake workflow\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e5:00pm:\u003c/strong\u003e DONE\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003c/ul\u003e\n\u003cp dir=\"auto\"\u003e\u003cstrong\u003eWednesday, July 10th, 2019\u003c/strong\u003e\u003c/p\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e9a:00-10:20am:\u003c/strong\u003e Reviewing \u003ca href=\"/ngs-docs/angus/blob/2019/snakemake_for_qc.md\"\u003eadding onto our Snakemake workflow\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e10:20-10:40am:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e10:40am-12:00pm:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/de-novo-genome-assembly.md\"\u003eGenome Assembly\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e12:00-1:00pm:\u003c/strong\u003e LUNCH\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e1:00-2:00pm:\u003c/strong\u003e \u003ca href=\"https://twitter.com/ErichMSchwarz?lang=en\" rel=\"nofollow\"\u003eErich Schwarz\u003c/a\u003e - \u003ca href=\"https://osf.io/kz5hn/\" rel=\"nofollow\"\u003eDoing science with big genomes\u003c/a\u003e - \u003ca href=\"https://www.youtube.com/watch?v=xZu6QU63OWQ\u0026amp;feature=youtu.be\" rel=\"nofollow\"\u003evideo\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e2:00-2:10pm:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e2:15-3:30pm:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/de-novo-genome-assembly.md\"\u003eGenome Assembly\u003c/a\u003e (continued)\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e3:30-3:50pm:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e3:50-5:00pm:\u003c/strong\u003e Elective Lab: (1) \u003ca href=\"/ngs-docs/angus/blob/2019/more-unix-fun.md\"\u003eMore Practical Use of Unix\u003c/a\u003e \u0026amp; (2) BYOD\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e5:00pm:\u003c/strong\u003e DONE\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003c/ul\u003e\n\u003cp dir=\"auto\"\u003e\u003cstrong\u003eThursday, July 11th, 2019\u003c/strong\u003e\u003c/p\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e9:00-10:20am:\u003c/strong\u003e Elective Lab: (1) \u003ca href=\"/ngs-docs/angus/blob/2019/github.md\"\u003eIntro to Git\u003c/a\u003e \u0026amp; (2) BYOD\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e10:20-10:40am:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e10:40am-12:00pm:\u003c/strong\u003e Elective Lab: (1) \u003ca href=\"/ngs-docs/angus/blob/2019/github.md\"\u003eIntro to Git\u003c/a\u003e (continued) \u0026amp; (2) BYOD\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e12:00-1:00pm:\u003c/strong\u003e LUNCH\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e1:00-2:00pm:\u003c/strong\u003e \u003ca href=\"https://twitter.com/rociotmartinez?lang=en\" rel=\"nofollow\"\u003eRocio Martinez-Nunez\u003c/a\u003e - \u003ca href=\"https://osf.io/u4fk5/\" rel=\"nofollow\"\u003eWhat comes after ANGUS?\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e2:00-2:10pm:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e2:15-3:30pm:\u003c/strong\u003e Elective Lab: (1) \u003ca href=\"/ngs-docs/angus/blob/2019/amplicon_and_metagen.md\"\u003eMicrobial Ecology (a discussion on amplicon sequencing and metagenomics)\u003c/a\u003e \u0026amp; (2) \u003ca href=\"/ngs-docs/angus/blob/2019/transcriptome-assembly-nematostella.md\"\u003eTranscriptome Assembly\u003c/a\u003e and \u003ca href=\"/ngs-docs/angus/blob/2019/dammit_annotation.md\"\u003eAnnotation\u003c/a\u003e \u0026amp; (3) BYOD\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e3:30-3:50pm:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e3:50-5:00pm:\u003c/strong\u003e Elective Lab: \u003ca href=\"/ngs-docs/angus/blob/2019/sourmash.md\"\u003eQuick Insights from Sequencing Data with Sourmash\u003c/a\u003e \u0026amp; (2) BYOD\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e5:00pm:\u003c/strong\u003e DONE\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003c/ul\u003e\n\u003cp dir=\"auto\"\u003e\u003cstrong\u003eFriday, July 12th, 2019\u003c/strong\u003e\u003c/p\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e9:00-10:20am:\u003c/strong\u003e Elective Lab: (1) \u003ca href=\"/ngs-docs/angus/blob/2019/recovering-rep-genomes-from-mgs.md\"\u003eRecovering \"genomes\" from metagenomes\u003c/a\u003e \u0026amp; (2) \u003ca href=\"/ngs-docs/angus/blob/2019/RNA-seq-Analysis.md\"\u003eRNAseq in R\u003c/a\u003e \u0026amp; (3) BYOD\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e10:20-10:40am:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e10:40am-12:00pm:\u003c/strong\u003e Elective Lab: (1) \u003ca href=\"/ngs-docs/angus/blob/2019/recovering-rep-genomes-from-mgs.md\"\u003eRecovering \"genomes\" from metagenomes\u003c/a\u003e (continued) \u0026amp; (2) \u003ca href=\"/ngs-docs/angus/blob/2019/RNA-seq-Analysis.md\"\u003eRNAseq in R\u003c/a\u003e (continued) \u0026amp; (3) BYOD\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e12:00-1:00pm:\u003c/strong\u003e LUNCH\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e1:00-2:00pm:\u003c/strong\u003e \u003ca href=\"https://twitter.com/brooksph?lang=en\" rel=\"nofollow\"\u003ePhillip Brooks\u003c/a\u003e - Cloud platforms \u0026amp; Seven Bridges\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e2:00-2:10pm:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e2:15-3:30pm:\u003c/strong\u003e Elective Lab: (1) Seven Bridges \u0026amp; (2) \u003ca href=\"/ngs-docs/angus/blob/2019/Intro_to_Cluster.md\"\u003eOverview of Cluster Computing\u003c/a\u003e \u0026amp; (3) BYOD\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e3:30-3:50pm:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e3:50-5:00pm:\u003c/strong\u003e Elective
36F6
Lab: (1) Seven Bridges \u0026amp; (2) BYOC (Bring Your Own Cluster* questions *for slurm and UGE \u0026amp; (3) BYOD\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e5:00pm:\u003c/strong\u003e DONE\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003c/ul\u003e\n\u003cp dir=\"auto\"\u003e\u003cstrong\u003eSaturday, July 13th, 2019\u003c/strong\u003e\u003c/p\u003e\n\u003cp dir=\"auto\"\u003e(check out of your rooms and bring luggage over. Please be sure to bring your computer!)\u003c/p\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e9:00am-9:30am:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/cloud_resources.md\"\u003eCloud Resources\u003c/a\u003e with \u003ca href=\"https://twitter.com/perisateesh?lang=en\" rel=\"nofollow\"\u003eSateesh Peri\u003c/a\u003e\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e9:30am-10:00am:\u003c/strong\u003e \u003ca href=\"/ngs-docs/angus/blob/2019/_static/Lee-5-things.pdf\"\u003e5 things I wish I knew\u003c/a\u003e by \u003ca href=\"https://twitter.com/AstrobioMike?lang=en\" rel=\"nofollow\"\u003eMike Lee\u003c/a\u003e\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e10:00am-10:20am:\u003c/strong\u003e What to Slack after DIBSI? by \u003ca href=\"https://twitter.com/IntrprtngGnmcs?lang=en\" rel=\"nofollow\"\u003eShannon Joslin\u003c/a\u003e\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e10:20am-10:40am:\u003c/strong\u003e BREAK\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e10:40am-11:00am:\u003c/strong\u003e Survey in Room 1030\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e11:00am-11:30am:\u003c/strong\u003e Classroom feedback--1up/1down (in classrooms) \u0026amp; TA / Instructor meeting (in Rm1030)\u003c/li\u003e\n\u003cli\u003e\u003cstrong\u003e11:30am-12:00pm:\u003c/strong\u003e Titus Wrap up \u0026amp; Outro\n\u003cul dir=\"auto\"\u003e\n\u003cli\u003e\u003cstrong\u003e12:00pm:\u003c/strong\u003e THANK YOU \u0026amp; HAPPY TRAVELS!\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003c/ul\u003e\n\u003cp dir=\"auto\"\u003e\u003ca href=\"/ngs-docs/angus/blob/2019/feel-free-to-reach-out.md\"\u003eSome contact info\u003c/a\u003e 😊\u003c/p\u003e\n\u003c/article\u003e","renderedFileInfo":null,"shortPath":null,"symbolsEnabled":true,"tabSize":8,"topBannersInfo":{"overridingGlobalFundingFile":false,"globalPreferredFundingPath":null,"showInvalidCitationWarning":false,"citationHelpUrl":"https://docs.github.com/github/creating-cloning-and-archiving-repositories/creating-a-repository-on-github/about-citation-files","actionsOnboardingTip":null},"truncated":false,"viewable":true,"workflowRedirectUrl":null,"symbols":null},"copilotInfo":null,"copilotAccessAllowed":false,"modelsAccessAllowed":false,"modelsRepoIntegrationEnabled":false,"csrf_tokens":{"/ngs-docs/angus/branches":{"post":"XBwBsSwGb3Ji15QzD5xjnlJ5WKwa-B2vWFYHC19PgY1xOBAagXhmHBYpo_RPVS6kxT-9wlgiC7zCDN8YvzzLwg"},"/repos/preferences":{"post":"_Y1BXeNELk5F--UQH680uutn5VW5TFHsIJGQKu6PVsi3a7_iv218wquynL7FS4EG_9ITIgR0Vfpkd96NUJBEUw"}}},"title":"angus/index.md at 2019 · ngs-docs/angus","appPayload":{"helpUrl":"https://docs.github.com","findFileWorkerPath":"/assets-cdn/worker/find-file-worker-263cab1760dd.js","findInFileWorkerPath":"/assets-cdn/worker/find-in-file-worker-b84e9496fc59.js","githubDevUrl":null,"enabled_features":{"code_nav_ui_events":false,"react_blob_overlay":false,"accessible_code_button":true}}}
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