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    24 repositories

    • CLAiMem-ALL

      Public
      Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
      Python
      •437•0•0•1•Updated Jun 29, 2025Jun 29, 2025

    • GOW

      Public
      TypeScript
      •1•0•0•0•Updated May 8, 2025May 8, 2025

    • pathology-foundation-models

      Public
      List of pathology feature extractors and foundation models
      12•0•0•0•Updated Apr 27, 2025Apr 27, 2025

    • TRIDENT

      Public
      Toolkit for large-scale whole-slide image processing.
      Python
      •
      Other
      •50•0•0•0•Updated Apr 8, 2025Apr 8, 2025

    • TopoModelX

      Public
      Topological Deep Learning
      Jupyter Notebook
      •
      MIT License
      •100•0•0•0•Updated Mar 14, 2025Mar 14, 2025

    • awesome-topological-deep-learning

      Public
      A curated list of topological deep learning (TDL) resources and links.
      19•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • flower

      Public
      Flower: A Friendly Federated AI Framework
      Python
      •
      Apache License 2.0
      •1k•0•0•0•Updated Feb 25, 2025Feb 25, 2025

    • model-evaluator

      Public archive
      Evaluate custom and HuggingFace text-to-image/zero-shot-image-classification models like CLIP, SigLIP, DFN5B, and EVA-CLIP. Metrics include Zero-shot accuracy, Linear Probe, Image retrieval, and KNN accuracy.
      Jupyter Notebook
      •
      Apache License 2.0
      •2•1•0•0•Updated Nov 28, 2024Nov 28, 2024

    • HistoXGAN

      Public
      Accurate encoding of histologic images into StyleGAN space for discovery and explainability
      Python
      •3•0•0•0•Updated Nov 18, 2024Nov 18, 2024

    • AEM

      Public
      AEM: Attention Entropy Maximization for Multiple Instance Learning based Whole Slide Image Classification
      Python
      •1•0•0•0•Updated Oct 20, 2024Oct 20, 2024

    • lightly

      Public
      A python library for self-supervised learning on images.
      Python
      •
      MIT License
      •300•1•0•0•Updated Sep 25, 2024Sep 25, 2024

    • slideflow

      Public
      Powerful, open-source AI tools for digital pathology.
      Python
      •
      Apache License 2.0
      •52•1•0•0•Updated Sep 25, 2024Sep 25, 2024

    • qupath-extension-wsinfer

      Public
      QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
      Java
      •
      Apache License 2.0
      •9•1•0•0•Updated Aug 29, 2024Aug 29, 2024

    • FLSim

      Public
      Federated Learning Simulator (FLSim) is a flexible, standalone core library that simulates FL settings with a minimal, easy-to-use API. FLSim is domain-agnostic and accommodates many use cases such as vision and text.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •56•0•0•0•Updated Aug 26, 2024Aug 26, 2024

    • EEG-Datasets

      Public
      A list of all public EEG-datasets
      590•0•0•0•Updated Aug 5, 2024Aug 5, 2024

    • wsinfer

      Public
      🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
      Python
      •
      Apache License 2.0
      •13•0•0•0•Updated Jul 11, 2024Jul 11, 2024

    • PathoDuet

      Public
      Python
      •
      Other
      •10•1•0•0•Updated Jun 24, 2024Jun 24, 2024

    • HistoMIL

      Public
      A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.
      Python
      •
      GNU General Public License v3.0
      •8•1•0•0•Updated May 21, 2024May 21, 2024

    • Histopathology-Datasets

      Public
      Ressources of histopathology datasets
      66•0•0•0•Updated Apr 29, 2024Apr 29, 2024

    • HIPT

      Public
      Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)
      Jupyter Notebook
      •
      Other
      •101•0•0•0•Updated Mar 19, 2024Mar 19, 2024

    • Awesome-Domain-Generalization

      Public
      Awesome things about domain generalization, including papers, code, etc.
      47•0•0•0•Updated Aug 5, 2023Aug 5, 2023

    • MI-Zero

      Public
      Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023
      Python
      •
      Other
      •7•0•0•0•Updated Jun 19, 2023Jun 19, 2023

    • medical-ai-research-foundations

      Public
      Python
      •
      Apache License 2.0
      •24•0•0•0•Updated May 11, 2023May 11, 2023

    • HistoFL

      Public
      Federated Learning for Computational Pathology - Medical Image Analysis
      Python
      •14•0•0•0•Updated Feb 9, 2022Feb 9, 2022
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