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    35 repositories

    • FastRet

      Public
      FastRet is an R package for predicting retention times in liquid chromatography. It can be used through the R console or through a graphical user interface.
      data-sciencelcms
      R
      •0•0•0•0•Updated Jun 5, 2025Jun 5, 2025

    • bellasplit

      Public
      A micro service creating data splits for deep learning applications in digital pathology.
      Python
      •
      MIT License
      •0•0•0•0•Updated May 28, 2025May 28, 2025

    • urnc

      Public
      Uni Regensburg Notebook Converter
      Python
      •
      MIT License
      •1•5•8•1•Updated May 27, 2025May 27, 2025

    • tissueResolver

      Public
      tissueResolver is a package for converting bulk RNA-seq datasets into virtual tissues using information from similar single cell datasets by assigning weights to true single cells, maintaining their molecular integrity. Virtual tissues can be analyzed in a similar way as conventional single cell datasets.
      R
      •
      MIT License
      •0•3•1•0•Updated May 27, 2025May 27, 2025

    • bellameta

      Public
      A micro service managing metadata of whole slide image (WSI) scans for digital pathology applications.
      Python
      •
      MIT License
      •0•0•0•0•Updated May 27, 2025May 27, 2025

    • dabih

      Public
      dabih is a secure way to upload and share data, end-to-end encrypted, using the WebCrypto API
      JavaScript
      •
      MIT License
      •2•6•0•0•Updated May 22, 2025May 22, 2025

    • MHN-Gill-Sim

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 9, 2025May 9, 2025

    • metabodecon

      Public
      An R package for deconvolution, alignment and postprocessing of 1D NMR spectra, resulting in a data matrix of aligned signal integrals
      R
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated May 7, 2025May 7, 2025

    • bellastore

      Public
      Organizing whole slide image scans by automatically creating a storage and keeping track of new data via an sqlite database
      Python
      •
      MIT License
      •0•0•0•0•Updated May 6, 2025May 6, 2025

    • imlui

      Public
      R package for hosting a web app to share, apply and understand statistical models and datasets.
      R
      •
      MIT License
      •0•0•0•1•Updated May 3, 2025May 3, 2025

    • LearnMHN

      Public
      A Python package to work with Mutual Hazard Networks (MHN)
      Python
      •
      MIT License
      •4•5•0•0•Updated Apr 11, 2025Apr 11, 2025

    • mdrb

      Public
      Metabodecon Rust Backend for R
      Rust
      •
      GNU General Public License v3.0
      •0•0•1•1•Updated Apr 10, 2025Apr 10, 2025

    • spang-lab.r-universe.dev

      Public
      0•0•0•0•Updated Apr 8, 2025Apr 8, 2025

    • urncjp

      Public
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 1, 2025Apr 1, 2025

    • harplication

      Public
      An R package tooling harp in order to apply it to simulation and real world deconvolution scenarios
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 5, 2025Mar 5, 2025

    • harp

      Public
      Harp is an R package that estimates reference profiles and cell compositions for deconvolution of bulk transcriptomic data
      R
      •
      MIT License
      •0•3•0•0•Updated Feb 26, 2025Feb 26, 2025

    • CIBERSORTx_application

      Public
      This repository tools the CIBERSORTx docker container as needed to reproduce the results in HARP: Platform Independent Deconvolution Tool (Nozari et al.)
      Shell
      •
      MIT License
      •0•0•0•0•Updated Feb 26, 2025Feb 26, 2025

    • tissueResolver-docs

      Public
      Vignette for the tissueResolver pipeline. We explain the most important steps in accessing the tissueResolver package via reproducing the case study of our publication
      HTML
      •
      MIT License
      •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • pamly-lib

      Public
      Rust
      •0•2•0•0•Updated Aug 29, 2024Aug 29, 2024

    • adadmire

      Public
      Python package for detecting anomalies in tabular datasets using Mixed Graphical Models
      Python
      •
      MIT License
      •0•3•6•0•Updated Jan 26, 2024Jan 26, 2024

    • urnc-example-course-public

      Public
      Public version of urnc-example-course (https://github.com/spang-lab/urnc-example-course) auto generated by urnc (https://github.com/spang-lab/urnc)
      Jupyter Notebook
      •0•0•0•0•Updated Dec 19, 2023Dec 19, 2023

    • urnc-example-course

      Public
      Example course demonstrating the use of urnc (https://github.com/spang-lab/urnc)
      Jupyter Notebook
      •0•0•0•0•Updated Dec 19, 2023Dec 19, 2023

    • TenSIR

      Public
      SIR model parameter estimation using a novel algorithm for differentiated uniformization.
      machine-learningmodelingscientific-computingmachinelearningparameter-estimationtensorssir-modelcovid-19covid19
      Python
      •
      GNU General Public License v3.0
      •1•6•0•0•Updated Dec 9, 2023Dec 9, 2023

    • MHN

      Public
      R
      •4•1•0•0•Updated Mar 3, 2023Mar 3, 2023

    • lyra-lymmml-client

      Public
      JavaScript
      •
      MIT License
      •0•1•0•20•Updated Dec 31, 2022Dec 31, 2022

    • FastqPuri

      Public
      fastq quality assessment and filtering tool
      C
      •
      GNU General Public License v3.0
      •12•1•0•0•Updated Dec 10, 2022Dec 10, 2022

    • digger

      Public
      A simple R frontend for datatomb
      R
      •
      MIT License
      •0•0•0•0•Updated May 4, 2022May 4, 2022

    • datatomb

      Public
      a simple HTTP server for storing and retrieving data sets and their metadata
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated May 4, 2022May 4, 2022

    • DTD

      Public
      Loss-Function Learning for Digital Tissue Deconvolution
      R
      •2•2•0•0•Updated Apr 26, 2022Apr 26, 2022

    • IsoCorrectoRGUI

      Public
      A Graphical User Interface for the IsoCorrectoR package.
      R
      •1•1•0•0•Updated May 7, 2021May 7, 2021
    0