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    131 repositories

    • release-go-update

      Public
      Data-release-pipeline: Synchronization of gk_central GO instances with Gene Ontology (http://geneontology.org/)
      releasedata-release-pipelinemysql-release
      Java
      •0•1•4•1•Updated Jun 1, 2025Jun 1, 2025

    • reactome_galaxy

      Public
      This is for running the analysis service
      Kotlin
      •
      Apache License 2.0
      •0•0•8•0•Updated May 30, 2025May 30, 2025

    • graph-core

      Public
      Models the Reactome knowledgebase into a interconnected graph
      Java
      •8•20•2•2•Updated May 30, 2025May 30, 2025

    • icon-validator

      Public
      Validate the structure and values of icon files
      Java
      •1•0•0•2•Updated May 30, 2025May 30, 2025

    • data-content

      Public
      Java
      •2•1•0•0•Updated May 29, 2025May 29, 2025

    • PathwayBrowser

      Public
      TypeScript
      •0•0•0•0•Updated May 29, 2025May 29, 2025

    • statistics-generator

      Public
      Cypher queries to generate automatically release statistics
      R
      •
      MIT License
      •0•1•2•0•Updated May 27, 2025May 27, 2025

    • Website

      Public
      Contains the code and configuration for the website
      PHP
      •
      GNU General Public License v2.0
      •2•5•1•0•Updated May 23, 2025May 23, 2025

    • graph-qa

      Public
      Used to report possible data inconsistencies
      Java
      •1•1•0•0•Updated May 13, 2025May 13, 2025

    • analysis-service

      Public
      A RESTful API to access pathway analysis tools
      Java
      •3•4•1•1•Updated May 11, 2025May 11, 2025

    • content-service

      Public
      The new Reactome REST API to access the data
      Java
      •6•12•1•1•Updated May 11, 2025May 11, 2025

    • analysis-report

      Public
      Java
      •
      GNU Affero General Public License v3.0
      •2•1•0•0•Updated May 11, 2025May 11, 2025

    • event-pdf

      Public
      Generates the Reactome book
      Java
      •
      GNU Affero General Public License v3.0
      •1•1•0•0•Updated May 11, 2025May 11, 2025

    • data-export

      Public
      Creates the files to be placed in the download section
      Java
      •2•2•2•2•Updated May 11, 2025May 11, 2025

    • sbml-exporter

      Public
      Java
      •1•0•0•0•Updated May 11, 2025May 11, 2025

    • interactors-core

      Public
      Java
      •2•0•0•1•Updated May 11, 2025May 11, 2025

    • search-core

      Public
      Java
      •2•1•0•0•Updated May 11, 2025May 11, 2025

    • reaction-exporter

      Public
      Java
      •2•0•0•0•Updated May 11, 2025May 11, 2025

    • fireworks-exporter

      Public
      Exports the pathways overview as raster images
      Java
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated May 11, 2025May 11, 2025

    • search-indexer

      Public
      Java
      •3•0•0•1•Updated May 11, 2025May 11, 2025

    • diagram-exporter

      Public
      Exporter of the diagram layout to different formats (pptx, svg, png, gif, jpg, sbgn)
      Java
      •3•1•2•2•Updated May 11, 2025May 11, 2025

    • analysis-core

      Public
      Pathway enrichment and expression analysis as well as species comparison tool
      Java
      •6•3•1•0•Updated May 11, 2025May 11, 2025

    • diagram-reader

      Public
      Java
      •1•0•0•1•Updated May 11, 2025May 11, 2025

    • release-update-dois

      Public
      Data-release-pipeline: Updates DOIs of pathways that were updated significantly between releases (these pathways will be tagged as needing a value in their doi attribute)
      releasedata-release-pipelinemysql-release
      Java
      •0•1•0•0•Updated May 7, 2025May 7, 2025

    • pwp-browser

      Public
      A tool for visualising and interacting with pathways data
      Java
      •8•11•0•1•Updated May 6, 2025May 6, 2025

    • pwp-analytics

      Public
      Google Analytics
      Java
      •0•0•0•1•Updated May 6, 2025May 6, 2025

    • release-download-directory

      Public
      Data-release-pipeline: Generation of files for the Reactome website download directory
      releasedata-release-pipelinemysql-release
      Java
      •1•0•10•1•Updated May 1, 2025May 1, 2025

    • BioPAX3Exporter

      Public
      Export of BioPAX Level 3 from graph database
      Kotlin
      •0•0•0•0•Updated May 1, 2025May 1, 2025

    • literature-databases

      Public
      Other
      •0•0•0•0•Updated Apr 28, 2025Apr 28, 2025

    • release-orthopairs

      Public
      Data-release-pipeline: Retrieval of homology data (human to other species) from PANTHER (http://www.pantherdb.org/)
      releasedata-release-pipeline
      Java
      •0•0•2•2•Updated Apr 25, 2025Apr 25, 2025
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