8000 Commits · alexdobin/STAR · GitHub

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Commits

Commits on Jan 25, 2024

Commits on Dec 22, 2023

2.7.11a_Diploid_TrSAMfix. Behavior change: replaced --quantTranscriptomeBan option with --quantTranscriptomeSAMoutput option. New option: --quantTranscriptomeSAMoutput BanSingleEnd_ExtendSoftclip :…
alexdobin
committed

Commits on Aug 15, 2023

Commits on Aug 8, 2023

Commits on Jul 24, 2023

Issue #1909: Fixed a bug causing wrong sequence length in the UB SAM tag for --soloType CB_UMI_Complex.
alexdobin
committed

Commits on Jul 19, 2023

2.7.10b_alpha_2023-07-19. Finalized --soloCBtype String option for arbitrary cell barcode strings without passlist.
alexdobin
committed

Commits on Jul 18, 2023

Implemented option for arbitrary cell barcode strings without passlist.
alexdobin
committed

Commits on Jul 6, 2023

Added STARsolo BAM tag sF, which outputs the feature type and number of genes for each read.
alexdobin
committed

Commits on Jun 20, 2023

2.7.10b_alpha_23-06-20: Fixed a GstrandBit issue for the on-the-fly insertion of extra genomic sequences.
alexdobin
committed

Commits on Jun 9, 2023

Commits on May 2, 2023

Fixed haplotype tag (ha) for STARdiploid SAM/BAM output.
alexdobin
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Commits on Mar 24, 2023

Fixed issues with 2-pass and WASP for diploid genome mapping.
alexdobin
committed

Commits on Mar 9, 2023

Fixed primary flag for diploid transformation.
alexdobin
committed

Commits on Mar 8, 2023

Finalizing STARdiploid.
alexdobin
committed

Commits on Mar 1, 2023

2.7.10b_alpha_230301: Issue #1763: Fixed a bug causing segnmentation fault in rare cases for 2-pass mapping.
alexdobin
committed

Commits on Jan 11, 2023

2.7.10b_alpha_220111: Issue #1733: Fixed the issue with counting of intronicAS reads in STARsolo CellReads.stats output with --soloFeatures GeneFull_Ex50pAS option.
alexdobin
committed

Commits on Dec 12, 2022

fix more typos
rcannood
authored

Commits on Nov 22, 2022

Commits on Nov 21, 2022

standardise parameter format
rcannood
authored

Commits on Nov 1, 2022

2.7.10b
alexdobin
committed

Commits on Oct 20, 2022

Commits on Oct 19, 2022

Reduced RAM usage for large STARsolo runs.
alexdobin
committed

Commits on Sep 16, 2022

< 6D40 a class="Title-module__anchor--SyQM6 Title-module__inline--x4zR5" href="/alexdobin/STAR/commit/ee504846bd45fd004c90e40945d8e1c5a7f959be">Merge branch 'jeffhussmann-avoid_genome_collisions'
alexdobin
committed
Merge branch 'avoid_genome_collisions' of https://github.com/jeffhussmann/STAR into jeffhussmann-avoid_genome_collisions
alexdobin
committed
Issue #1645: fixed rare seg-fault for --soloFeature SJ. Issue # 1650: added #include <sys/types.h> to SharedMemory.cpp to fix compilation issue on some systems.
alexdobin
committed

Commits on Aug 31, 2022

Issue #719: implemented auto re-allocation of the SJ output buffer.
alexdobin
committed

Commits on Aug 25, 2022

Issue #1612: fixed the problem with Solo.out/SJ/raw/features.tsv sym-link.
alexdobin
committed

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