Description
I was trying to run the example described in the setup instructions:
CUDA_VISIBLE_DEVICES="0" python unet2ds_nf.py evaluate neurofinder.00.00 --model unet2ds_model.hdf5
The error is as follows:
/home/anaconda3/lib/python3.6/importlib/_bootstrap.py:219: RuntimeWarning: compiletime version 3.5 of module 'tensorflow.python.framework.fast_tensor_util' does not match runtime version 3.6
return f(*args, **kwds)
/home/anaconda3/lib/python3.6/site-packages/h5py/init.py:34: FutureWarning: Conversion of the second argument of issubdtype from float to np.floating is deprecated. In future, it will be treated as np.float64 == np.dtype(float).type.
from ._conv import register_converters as _register_converters
Using TensorFlow backend.
INFO:nf_load_hdf5:neurofinder.00.00 already downloaded.
INFO:nf_load_hdf5:Preparing hdf5 files for neurofinder.00.00.
INFO:evaluation:Evaluation with TTA.
XXX lineno: 167, opcode: 0
Traceback (most recent call last):
File "unet2ds_nf.py", line 147, in
f(**args)
File "unet2ds_nf.py", line 68, in evaluation
augmentation=aug, # Test-time augmentation.
File "/home/.local/lib/python3.6/site-packages/deepcalcium/models/neurons/unet_2d_summary.py", line 561, in predict
custom_objects=self.custom_objects)
File "/home/.local/lib/python3.6/site-packages/deepcalcium/utils/keras_helpers.py", line 66, in load_model_with_new_input_shape
model = load_model(path, **load_model_args)
File "/home/anaconda3/lib/python3.6/site-packages/keras/models.py", line 243, in load_model
model = model_from_config(model_config, custom_objects=custom_objects)
File "/home/anaconda3/lib/python3.6/site-packages/keras/models.py", line 317, in model_from_config
return layer_module.deserialize(config, custom_objects=custom_objects)
File "/home/anaconda3/lib/python3.6/site-packages/keras/layers/init.py", line 55, in deserialize
printable_module_name='layer')
File "/home/anaconda3/lib/python3.6/site-packages/keras/utils/generic_utils.py", line 143, in deserialize_keras_object
list(custom_objects.items())))
File "/home/anaconda3/lib/python3.6/site-packages/keras/engine/topology.py", line 2517, in from_config
process_node(layer, node_data)
File "/home/anaconda3/lib/python3.6/site-packages/keras/engine/topology.py", line 2474, in process_node
layer(input_tensors[0], **kwargs)
File "/home/anaconda3/lib/python3.6/site-packages/keras/engine/topology.py", line 617, in call
output = self.call(inputs, **kwargs)
File "/home/anaconda3/lib/python3.6/site-packages/keras/layers/core.py", line 663, in call
return self.function(inputs, **arguments)
File "../deepcalcium/models/neurons/unet_2d_summary.py", line 167, in
SystemError: unknown opcode