8000 support for irods: protocol · Issue #53 · cancerit/PCAP-core · GitHub
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support for irods: protocol #53
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support for irods: protocol#53
@mgcam

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@mgcam
mgcam
opened on Feb 6, 2020

bam_stats is unable to read files in iRODS in the presence of iRODS libhts plugin since the check for the file existence in the beginning of the program does not understand irods: protocol. It might be better to leave htslib to figure our whether it can retrieve the file.

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