8000 Commits · davidt0x/sofima · GitHub

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Commits

Commits on Oct 18, 2023

Return v from mesh solver.
davidt0x
committed

Commits on Oct 16, 2023

Add prev_fn_kwargs argument.
davidt0x
committed

Commits on Sep 25, 2023

[LSC] Ignore incorrect type annotations related to jax.numpy APIs

Jake VanderPlas
authored and
copybara-github
committed

Commits on Aug 21, 2023

Add .editorconfig.

mjanusz
authored and
copybara-github
committed

Commits on Aug 18, 2023

Add pyink default settings.

mjanusz
authored and
copybara-github
committed

Commits on Jul 17, 2023

Include the decorators submodule in the sofima package.

jan-matthis
authored and
copybara-github
committed
Add decorators.

jan-matthis
authored and
copybara-github
committed

Commits on Jul 14, 2023

Change OpenCV import.

jan-matthis
authored and
copybara-github
committed

Commits on Apr 14, 2023

Propagate stride to compute_target_mesh.

mjanusz
authored and
copybara-github
committed

Commits on Apr 11, 2023

Add missing "!pip install" call for neuroglancer.

mjanusz
authored and
copybara-github
committed

Commits on Apr 7, 2023

Remove useless outputs from the EM alignment notebook.

mjanusz
authored and
copybara-github
committed

Commits on Mar 20, 2023

Commits on Mar 15, 2023

Include the processor submodule in the sofima package.

mjanusz
authored and
copybara-github
committed
Fix a bug in compute_flow_map3d (moving the whole box vs the start point).

mjanusz
authored and
copybara-github
committed
Remove from __future__ imports.

mjanusz
authored and
copybara-github
committed

Commits on Mar 10, 2023

Cast origin coordinates to jnp.array.

Connectomics Team
authored and
copybara-github
committed

Commits on Mar 6, 2023

Add support for explicit tile masks.

mjanusz
authored and
copybara-github
committed
Add a processor for rendering stitched 3d tiles.

mjanusz
authored and
copybara-github
committed

Commits on Feb 21, 2023

Fix or ignore some pytype errors related to jnp.ndarray == jax.Array.

hawkinsp
authored and
copybara-github
committed

Commits on Feb 17, 2023

Commits on Feb 16, 2023

Add support for 3d tiles in flow estimation and mesh optimization.

mjanusz
authored and
copybara-github
committed

Commits on Feb 2, 2023

Minor docstring fix in map_utils.

mjanusz
authored and
copybara-github
committed

Commits on Feb 1, 2023

Add support for a batch dimension in elastic_mesh_3d.

mjanusz
authored and
copybara-github
committed
Generalize more operations in map_utils to 3d coordinate maps.

mjanusz
authored and
copybara-github
committed
Add a function to compute forces on a 3d mesh (for coarse stitching).

mjanusz
authored and
copybara-github
committed

Commits on Jan 27, 2023

Bump up required Python version to 3.9 due to the use of https://peps.python.org/pep-0585/

mjanusz
authored and
copybara-github
committed

Commits on Jan 20, 2023

Remove integral mask variables to save memory.

Connectomics Team
authored and
copybara-github
committed

Commits on Jan 18, 2023

Move away from a deprecated submodule in scipy (fftpack.helper -> fftpack).

mjanusz
authored and
copybara-github
committed

Commits on Jan 17, 2023

Fix typo in make_affine_map docstring.

Connectomics Team
authored and
copybara-github
committed

Commits on Nov 18, 2022

Add a bool argument for optional returning of the warped tiles and their relative positions.

Connectomics Team
authored and
copybara-github
committed

Commits on Oct 7, 2022

[JAX] Import scipy submodules directly in code that uses them.

hawkinsp
authored and
copybara-github
committed

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