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Hi,
First, thanks for developing updog!
I'd like to use the results from updog with another software, Entropy (https://bitbucket.org/buerklelab/mixedploidy-entropy/), which needs phred-scaled genotype likelihoods (PL), as computed by GATK. Do you have any suggestions on how to do that? Should I just multiply the genotype log-likelihood values from updog by -10?
Best regards,
Yann