PACE sorted mdocs differ from SerialEM mdocs

@eisfabian

Hey @eisfabian - thanks for all of your hard work here!

I've heard a couple of rumblings now that the 'sorted' mdoc files PACE writes out here

Lines 261 to 280 in 90d5ad2

    
           def writeMdoc(header, items, filename): 
        
               content = "" 
        
               for line in header: 
        
                   if line.startswith("[T"): 
        
                       content += os.linesep 
        
                   content += line + os.linesep 
        
               content += os.linesep 
        
               for i, item in enumerate(items): 
        
                   content += "[ZValue = " + str(i) + "]" + os.linesep 
        
                   item.pop("ZValue") 
        
                   item.pop("index") 
        
                   for key, attr in item.items(): 
        
                       content += key + " = " 
        
                       for val in attr: 
        
                           content += str(val) + " " 
        
                       content += os.linesep 
        
                   content += os.linesep 
        
               with open(filename, "w", newline="") as f: 
        
                   f.write(content) 
        
               return

differ enough from SerialEM's files that Warp 2.0 fails to parse them correctly (e.g. warpem/warp#310)

I could write extra compatibility code but it might avoid other problems elsewhere to make the files here better match those produced by SerialEM, what do you think?

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	def writeMdoc(header, items, filename):
	content = ""
	for line in header:
	if line.startswith("[T"):
	content += os.linesep
	content += line + os.linesep
	content += os.linesep
	for i, item in enumerate(items):
	content += "[ZValue = " + str(i) + "]" + os.linesep
	item.pop("ZValue")
	item.pop("index")
	for key, attr in item.items():
	content += key + " = "
	for val in attr:
	content += str(val) + " "
	content += os.linesep
	content += os.linesep
	with open(filename, "w", newline="") as f:
	f.write(content)
	return

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