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The display of "ssAAV" and "scAAV" together in the same report is misleading; one of these will always be noncanonical depending on the vector design (given vector_type), and should instead be reported as "other-vector".
- Given
vector_typeof ssAAV or scAAV, reassign the non-matching type (scAAV or ssAAV, respectively) to "other-vector" for display in the report. - In the code and TSVs, use a "strandedness" or "polarity" column to distinguish the alignment characteristics (e.g. "+/-") from the reported classification -- see Add Strand to Alignment TSV file #32 and Consolidate output TSVs and remove .Rdata output #29.
- As a consequence, Tables 1 and 2 will only show one of "ssAAV" or "scAAV", but not both, along with "other-vector".
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