8000 Bus error when trying to save the reconstructed images · Issue #32 · gift-surg/NiftyMIC · GitHub
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Bus error when trying to save the reconstructed images #32

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ImanKafian opened this issue Sep 12, 2023 · 2 comments
Open

Bus error when trying to save the reconstructed images #32

ImanKafian opened this issue Sep 12, 2023 · 2 comments

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@ImanKafian
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Hi,

I am using the docker image and am trying to generate a reconstructed volume of two sets of MRI dataset and I am using the niftymic_reconstruct_volume_from_slices. The reconstruction is done successfully. However, when the code tries to save the image, I receive a "Bus error" without any extra explanation. I mounted a host directory and checked the permission for writing from a container. All permission and write accesses are in place. Could you please help me understand what the possible sources of this bus error are and how I can resolve them.

Thank you very much for your help.

Best,
Iman

@IvanSanchezFernandez
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Same problem here. Did you find a solution to this?

@IvanSanchezFernandez
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I have no idea what was causing the bus problem in my case, but I solved by: uninstalling completely Docker and WSL2, reinstalling it (using an Ubuntu24 distribution rather than 22 distribution, and naming the output file with a .nii.gz rather than .nii ending. I am not sure what factor was the factor that made the difference, but it worked for me. Hope this helps somebody.

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