From 500ac66031e24aff60661c729d402e4867032be6 Mon Sep 17 00:00:00 2001
From: Gisli Magnusson <gmagnusson@genedx.com>
Date: Mon, 5 May 2025 15:49:48 +0000
Subject: [PATCH 1/2] Add test data.

---
 tests/data | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/data b/tests/data
index 16069188..306332b1 160000
--- a/tests/data
+++ b/tests/data
@@ -1 +1 @@
-Subproject commit 16069188d0d602c5b08233a8f6696f5c3ded6e78
+Subproject commit 306332b13d9188fe136477538e8c8a91bb952eaa

From 3cfb3684f675d36a60097cffa29d4257db7b8e38 Mon Sep 17 00:00:00 2001
From: Gisli Magnusson <gmagnusson@genedx.com>
Date: Mon, 5 May 2025 18:10:52 +0000
Subject: [PATCH 2/2] feat(ENGKNOW-2158):  Count number of lowmemory
 exceptions.

---
 .../src/main/scala/gorsat/Monitors/MemoryMonitor.scala    | 8 ++------
 .../gorsat/gorsatGorIterator/MemoryMonitorUtil.scala      | 8 ++++++--
 2 files changed, 8 insertions(+), 8 deletions(-)

diff --git a/gortools/src/main/scala/gorsat/Monitors/MemoryMonitor.scala b/gortools/src/main/scala/gorsat/Monitors/MemoryMonitor.scala
index 8ba375a6..d8aaba9e 100644
--- a/gortools/src/main/scala/gorsat/Monitors/MemoryMonitor.scala
+++ b/gortools/src/main/scala/gorsat/Monitors/MemoryMonitor.scala
@@ -24,21 +24,17 @@ package gorsat.Monitors
 
 import gorsat.Commands.Analysis
 import gorsat.gorsatGorIterator.MemoryMonitorUtil
-import org.gorpipe.exceptions.custom.GorLowMemoryException
 import org.gorpipe.gor.model.Row
 
 case class MemoryMonitor(logname: String,
                          minFreeMemMB: Int = MemoryMonitorUtil.memoryMonitorMinFreeMemMB,
                          minFreeMemRatio: Float = MemoryMonitorUtil.memoryMonitorMinFreeMemRatio) extends Analysis {
-  val mmu: MemoryMonitorUtil = new MemoryMonitorUtil((actualFreeMem: Long, args: List[_]) => {
-    val msg = "MemoryMonitor: Out of memory executing " + logname + "(line " + mmu.lineNum + ").  Free mem down to " + actualFreeMem / mmu.bytesInMB + " MB.\n" + args.head
-    throw new GorLowMemoryException(msg)
-  }, minFreeMemMB, minFreeMemRatio)
+  val mmu: MemoryMonitorUtil = new MemoryMonitorUtil(MemoryMonitorUtil.basicOutOfMemoryHandler, minFreeMemMB, minFreeMemRatio)
 
   override def isTypeInformationMaintained: Boolean = true
 
   override def process(r: Row): Unit = {
-    mmu.check(r)
+    mmu.check(logname, mmu.lineNum, r)
     super.process(r)
   }
 }
\ No newline at end of file
diff --git a/model/src/main/scala/gorsat/gorsatGorIterator/MemoryMonitorUtil.scala b/model/src/main/scala/gorsat/gorsatGorIterator/MemoryMonitorUtil.scala
index 71b6d03a..2128b2b7 100644
--- a/model/src/main/scala/gorsat/gorsatGorIterator/MemoryMonitorUtil.scala
+++ b/model/src/main/scala/gorsat/gorsatGorIterator/MemoryMonitorUtil.scala
@@ -22,6 +22,7 @@
 
 package gorsat.gorsatGorIterator
 
+import org.gorpipe.exceptions.custom.GorLowMemoryException
 import org.slf4j.{Logger, LoggerFactory}
 
 
@@ -108,11 +109,14 @@ object MemoryMonitorUtil {
 
   val memoryMonitorActive: Boolean = (memoryMonitorMinFreeMemMB > 0 || memoryMonitorMinFreeMemRatio > 0) && memoryMonitorRowsBetweenChecks > 0
 
+  var lowMemoryExceptions: List[String] = List()
+
   def basicOutOfMemoryHandler(actualFreeMem: Long, args: List[_]) : Unit = {
     val logName = args.head
     val lineNum = args(1)
     val line = args(2)
-    val msg = "MemoryMonitor: Out of memory executing " + logName + " (line " + lineNum + ").  Free mem down to " + actualFreeMem / (1024L * 1024L) + " MB.\n" + line
-    throw new Exception(msg)
+    val msg = "MemoryMonitor: Out of memory executing: " + logName + " (line " + lineNum + ").  Free mem down to " + actualFreeMem / (1024L * 1024L) + " MB.\n" + line
+    lowMemoryExceptions = lowMemoryExceptions :+ msg
+    throw new GorLowMemoryException(msg)
   }
 }
\ No newline at end of file