Releases: gorpipe/gor
Releases · gorpipe/gor
v3.9.0
cherry pick from master
v3.8.0
gor v3.8.0 contains the following features:
- Add -1 flag to plinkregression to use 0/1 phenotypes instead of 1/2
- Add a method to get the filename for a WRITE function
- Add checks for write command
- Add combine gt option to prgtgen
- Allow nested files in NOR dictionaries
- Always compare full paths in dictionary find parent
- Cleanup GenomicIterator class
- Failing unit tests on Windows
- Fix gor dictionary relative path
- Fix listcount
- Fix pgor query fingerprint
- Fix plinkregression in gor wrong header
- Fix QueryArgument result string parsing
- Fix SAST scanning
- Leftover test files in gor meta tests
- prgtgen converged header issue
- Refactor Security and DB components
- StackOverflowError after 4 hours
- Support no validation/cache in parallel gor macros for spark partitioning
- Table service default bucketize off
- Use isLocal instead of http and tcp url check
v3.6.3
gor v3.6.3 contains the following features:
- Fix root path Plink regerssion
- Add combine gt option to prgtgen
v3.6.2
gor v3.6.2 contains the following features:
- Fix prgtgen converged header issue
- Fix plinkregression in gor wrong header
v3.6.1
gor v3.6.1 contains the following features:
- fix broken gor line in prgtgen
v3.7.0
gor v3.7.0 contains the following features:
- prgtgen generates corrupted .gorz files
- DynamicRowSource header cache seek/filter invariant
- Write meta files with gorz
- New command VERIFYVARIANT
- Support writing to gord folders
- Link file folders in GOR
- Publish GOR to Maven Central
- CommandParseUtils.quoteSafeSplit is slow
Note: This release had a blocker bug in GOR dictionaries resulting in pgor not working. This issue is fixed in release 3.6.1 and will be in future releases.
v3.6.0
gor v3.6.0 contains the following features:
- gorpipe ignores query error and produces corrupted data
- gor VCF file only returns chr1
- PRGTGEN HWD
- GTLD Command - returning results for each bucket
v3.5.0
gor v3.5.0 contains the following features:
- Change VcfGzGenomicIterator and VcfGzTabixGenomicIterator to return RowBase objects
- Add CALC functions for date/time handling
- Allow dot in column names in CALC and WHERE
- Change remaining iterators to use next returning Row rather than filling Line
- Fix DbSourceIterator
- Clean up GOR config
v3.4.0
gor v3.4.0 contains the following features:
Language changes:
- Improved GTLD
- Ensure gor order in gor writes
- Add SELWHERE command
Bug fixes:
- Fix implemented setPosition call on seek
- Fix GOR plinkregression header for mixed and quantitative phenotypes
- Fixes to GROUP command
- Fixes to GOR index
- Update King documentation
v3.3.0
gor v3.3.0 contains the following features:
Language changes:
- Nested split needs to be one based
- Handle togor in nor nested query
Bug fixes:
- Fix to GTTRANSPOSE
- pgor -split double-counts on the edges
- varjoin -n with nested query fails but works with materialized result (contains vargroup)
- vargroup fails on empty input
- Renable table bucket clean up