8000 Remove tale variants from atu_seq when a motif is repeated in sequence · Issue #45 · j-hagedorn/trilogy · GitHub
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Remove tale variants from atu_seq when a motif is repeated in sequence #45
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@j-hagedorn

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@j-hagedorn

This is based on an issue identified by @salmonix. In the example identified, the sequences of the tale variants are as follows for tale 1341A:

  1. "J2356","J2136","J2136"
  2. "J2356","J2136","J581"
  3. "J2356","J581","J2136"
  4. "J2356","J581","J581"

The text runs as following: "...The thieves kill him, too [J581, J2136]. (3) Two foolish slaves are recaptured because of their talkativeness [J581, J2136]..." The motifs identified are: J581 (Wisdom and Folly, Foolishness Of Noise-Making When Enemies Overhear) and J2136.1 (Wisdom and Folly).

@salmonix suggests that, in our cleared data perhaps we should only retain variants 2 and 3 above, and remove 1 and 4, where the same motif is repeated in a row.

Adding this as an issue for discussion: @sdaranyi and @salmonix, are we certain that we want to remove all tale variants where a motif is repeated 2 or more times in a row?

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