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Kharchenko Lab

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  1. pagoda2 pagoda2 Public

    R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

    JavaScript 229 47

  2. conos conos Public

    R package for the joint analysis of multiple single-cell RNA-seq datasets

    R 212 40

  3. numbat numbat Public

    Haplotype-aware CNV analysis from single-cell RNA-seq

    R 181 24

  4. Baysor Baysor Public

    Bayesian Segmentation of Spatial Transcriptomics Data

    Julia 175 33

  5. dropEst dropEst Public

    Pipeline for initial analysis of droplet-based single-cell RNA-seq data

    C++ 91 42

  6. scITD scITD Public

    Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition

    R 58 3

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