8000 Commits · kpalin/EEL · GitHub

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Commits

Commits on Jan 27, 2015

Commits on May 26, 2014

Revealed computeKLdistaces command and cleared README
kpalin
committed

Commits on Jul 2, 2013

Fixed very old and somewhat serious (with negative cutoffs) bug in Motif matching code
kpalin
committed

Commits on Jan 15, 2013

Made ready for debian packaging
kpalin
committed

Commits on Sep 3, 2012

Fixed documentation for getTFBS
kpalin
committed

Commits on Jan 20, 2012

Commits on Sep 13, 2010

Finally added the example for the heuristic multiple alignment algorithm.
sksipila
committed

Commits on May 14, 2010

Removed some debugging prints
sksipila
committed
Added a missing }
sksipila
committed
Defined == in id_triple and added a constructor for Inputs for treeMultipleAlign
sksipila
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Added shortMultipleAlign, multiFromPairwise and treeMultipleAlign
sksipila
committed
Defined == in id_triple for treeMultiAlign
sksipila
committed
*** empty log message ***
sksipila
committed

Commits on Jun 25, 2008

Using smaller SCANNING_WINDOW_SIZE by default to limit memory usage.
jazkorho
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Commits on Jun 24, 2008

Added linebreak to the end.
jazkorho
committed
Bugfixes.
jazkorho
committed

Commits on Jun 6, 2008

Finalized new TFBS searching code. Zero-order background version now uses an Aho-Corasick based filter, but the original implementation is still used with Markov background.
jazkorho
committed

Commits on May 23, 2008

Switched to a simpler TFBS scanning algorithm due to problems in tests on Murska cluster
jazkorho
committed

Commits on May 21, 2008

Added comments.
jazkorho
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Commits on May 19, 2008

Added new preprocessor constant for _c_matrix.cc due to new TFBS scanning code.
jazkorho
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Changed to use the new TFBS search code.
jazkorho
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Rewrote TFBS search code.
jazkorho
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Rewrote TFBS search code. Scanning with zero-order bg is much faster now.
jazkorho
committed

Commits on Apr 1, 2008

Fixed an indentation.
kpalin
committed

Commits on Mar 12, 2008

Fixed "documentation"
kpalin
committed

Commits on Mar 10, 2008

Added "date-version".
kpalin
committed

Commits on Feb 29, 2008

Cut motif name from the end.
kpalin
committed
Report all snps
kpalin
committed
Should provide output even when the memory save was used
kpalin
committed

Commits on Jan 2, 2008

Added sequence names and descriptions to GFF output file.
kpalin
committed

Commits on Dec 13, 2007

Pass the c++ memory errors to python exceptions.
kpalin
committed

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