10000 Commits · lineCode/htslib · GitHub

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Commits

Commits on Aug 17, 2021

Modified warning to make it less severe.

whitwham
authored and
daviesrob
committed
Pair lines with symbolic alleles by END tag

pd3
authored and
whitwham
committed

Commits on Aug 10, 2021

Minor tidy ups for methylation test programs
jmarshall
committed
Small fix to MM-chebi.sam methylation test data.

jkbonfield
authored and
whitwham
committed
Add some error detection to bam_next_basemod.

jkbonfield
authored and
whitwham
committed
Change bam_plp_insertion_mod to return number of bases, not length.

jkbonfield
authored and
whitwham
committed
Added bam_plp_insertion_mod API.

jkbonfield
authored and
whitwham
committed
The pileup constructor now handles errors.

jkbonfield
authored and
whitwham
committed
Fix copyright notice

jkbonfield
authored and
whitwham
committed
Added base modification interfaces.

jkbonfield
authored and
whitwham
committed

Commits on Aug 9, 2021

Make bam_tag2cigar's CG tag handling more lenient.
jkbonfield
committed

Commits on Aug 8, 2021

README.md: Update for tabix. [skip ci]
junaruga
committed

Commits on Aug 5, 2021

Fix cram_dependent_data_series when FN is used.

jkbonfield
authored and
valeriuo
committed

Commits on Jul 29, 2021

Update htscodecs submodule

jkbonfield
authored and
daviesrob
committed
Work around a deadlock in hts_tpool_process_flush.

jkbonfield
and
daviesrob
committed

Commits on Jul 28, 2021

Update NEWS to add CVE number for 1.11's VCF parser fix
jmarshall
committed

Commits on Jul 14, 2021

Speed up BAM, CRAM 3.1 and 4.0 testing in test/test.pl's test_view.

jkbonfield
authored and
valeriuo
committed
Add "endpos" filter expression

jmarshall
authored and
jkbonfield
committed

Commits on Jul 7, 2021

Merge version number bump and NEWS file from master
valeriuo
committed
Release 1.13
valeriuo
committed
Update htscodecs module to release 1.1.1

daviesrob
authored and
jkbonfield
committed

Commits on Jul 6, 2021

Summer 2021 NEWS updates (PR #1303)

authored

Commits on Jun 24, 2021

Summer 2021 release copyright updates.

whitwham
authored and
daviesrob
committed
On MinGW-i686, testing for recv() requires the system header

jmarshall
authored and
valeriuo
committed

Commits on Jun 17, 2021

Make version.sh work from a separate build directory
jmarshall
committed

Commits on Jun 16, 2021

Improvements of index methods (#1299)
valeriuo
authored
Fix typos in INSTALL [minor]

jmarshall
authored and
jkbonfield
committed