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Description
Hi all.
Two tests of percolator-3.6.1 is failing on i686 architectures only:
+ /usr/bin/ctest --test-dir . --output-on-failure --force-new-ctest-process -j6
Test project /builddir/build/BUILD/percolator-rel-3-06-01/percolator
Start 1: UnitTest_Percolator_RunAllTests
1/1 Test #1: UnitTest_Percolator_RunAllTests ...***Failed 0.05 sec
[==========] Running 33 tests from 9 test suites.
[----------] Global test environment set-up.
[----------] 1 test from CrossValidationTest
[ RUN ] CrossValidationTest.doStepTest
[ OK ] CrossValidationTest.doStepTest (44 ms)
[----------] 1 test from CrossValidationTest (44 ms total)
[----------] 2 tests from ScoreHolderTest
[ RUN ] ScoreHolderTest.CheckOrderingFunctions
[ OK ] ScoreHolderTest.CheckOrderingFunctions (0 ms)
[ RUN ] ScoreHolderTest.CheckUniquenessFilter
[ OK ] ScoreHolderTest.CheckUniquenessFilter (0 ms)
[----------] 2 tests from ScoreHolderTest (0 ms total)
[----------] 2 tests from ScoresTest
[ RUN ] ScoresTest.CheckPopulating
[ OK ] ScoresTest.CheckPopulating (0 ms)
[ RUN ] ScoresTest.CheckPopulatingEmpty
[ OK ] ScoresTest.CheckPopulatingEmpty (0 ms)
[----------] 2 tests from ScoresTest (0 ms total)
[----------] 5 tests from DataSetTest
[ RUN ] DataSetTest.ChecMinimalPsmParsing
Warning: Set decoy prefix don't match
[ OK ] DataSetTest.ChecMinimalPsmParsing (0 ms)
[ RUN ] DataSetTest.CheckInvalidPsmLines
[ OK ] DataSetTest.CheckInvalidPsmLines (0 ms)
[ RUN ] DataSetTest.CheckPsmParsingWithFeatures
[ OK ] DataSetTest.CheckPsmParsingWithFeatures (0 ms)
[ RUN ] DataSetTest.CheckFeatureParsing
/builddir/build/BUILD/percolator-rel-3-06-01/tests/unit_tests/percolator/UnitTest_Percolator_DataSet.cpp:100: Failure
Expected: DataSet::readPsm("Id\t100000000000000000000\tPEPTIDE\tProteinList", 1, optionalFields, true, myPsm, featurePool, decoyPrefix) throws an exception of type MyException.
Actual: it throws nothing.
[ FAILED ] DataSetTest.CheckFeatureParsing (0 ms)
[ RUN ] DataSetTest.CheckOptionalFieldsParsing
[ OK ] DataSetTest.CheckOptionalFieldsParsing (0 ms)
[----------] 5 tests from DataSetTest (1 ms total)
[----------] 5 tests from SetHandlerTest
[ RUN ] SetHandlerTest.TestSubsetStoring
[ OK ] SetHandlerTest.TestSubsetStoring (0 ms)
[ RUN ] SetHandlerTest.TestGetOptionalFields
[ OK ] SetHandlerTest.TestGetOptionalFields (0 ms)
[ RUN ] SetHandlerTest.TestBadReads
ERROR: Cannot read Tab delimited input from data stream.
Input file seems to be in XML format, use the -k flag for XML input.
[ OK ] SetHandlerTest.TestBadReads (0 ms)
[ RUN ] SetHandlerTest.TestGoodReads
[ OK ] SetHandlerTest.TestGoodReads (0 ms)
[ RUN ] SetHandlerTest.TestReadWithFeatures
[ OK ] SetHandlerTest.TestReadWithFeatures (0 ms)
[----------] 5 tests from SetHandlerTest (1 ms total)
[----------] 3 tests from TabReaderTest
[ RUN ] TabReaderTest.CheckReadInt
/builddir/build/BUILD/percolator-rel-3-06-01/tests/unit_tests/percolator/UnitTest_Percolator_TabReader.cpp:46: Failure
Value of: reader.error()
Actual: false
Expected: true
/builddir/build/BUILD/percolator-rel-3-06-01/tests/unit_tests/percolator/UnitTest_Percolator_TabReader.cpp:46: Failure
Value of: reader.error()
Actual: false
Expected: true
[ FAILED ] TabReaderTest.CheckReadInt (0 ms)
[ RUN ] TabReaderTest.CheckReadDouble
[ OK ] TabReaderTest.CheckReadDouble (0 ms)
[ RUN ] TabReaderTest.CheckSequentialReading
[ OK ] TabReaderTest.CheckSequentialReading (0 ms)
[----------] 3 tests from TabReaderTest (0 ms total)
[----------] 4 tests from OptionTest
[ RUN ] OptionTest.CheckBasicOptionParsing
[ OK ] OptionTest.CheckBasicOptionParsing (0 ms)
[ RUN ] OptionTest.CheckThrowOnInvalidOption
[ OK ] OptionTest.CheckThrowOnInvalidOption (0 ms)
[ RUN ] OptionTest.CheckThrowOnRangeExceeded
[ OK ] OptionTest.CheckThrowOnRangeExceeded (0 ms)
[ RUN ] OptionTest.CheckSeparationOfOptionsAndArguments
[ OK ] OptionTest.CheckSeparationOfOptionsAndArguments (0 ms)
[----------] 4 tests from OptionTest (0 ms total)
[----------] 9 tests from FidoVectorTest
[ RUN ] FidoVectorTest.PackedVector
[ OK ] FidoVectorTest.PackedVector (0 ms)
[ RUN ] FidoVectorTest.packedReplace
[ OK ] FidoVectorTest.packedReplace (0 ms)
[ RUN ] FidoVectorTest.packedAddElement
[ OK ] FidoVectorTest.packedAddElement (0 ms)
[ RUN ] FidoVectorTest.swapElements
[ OK ] FidoVectorTest.swapElements (0 ms)
[ RUN ] FidoVectorTest.makeSparse
[ OK ] FidoVectorTest.makeSparse (0 ms)
[ RUN ] FidoVectorTest.packedProd
[ OK ] FidoVectorTest.packedProd (0 ms)
[ RUN ] FidoVectorTest.packedSubtract
[ OK ] FidoVectorTest.packedSubtract (0 ms)
[ RUN ] FidoVectorTest.packedAdd
[ OK ] FidoVectorTest.packedAdd (0 ms)
[ RUN ] FidoVectorTest.packedDotProd
[ OK ] FidoVectorTest.packedDotProd (0 ms)
[----------] 9 tests from FidoVectorTest (0 ms total)
[----------] 2 tests from FidoMatrixTest
[ RUN ] FidoMatrixTest.PackedMatrix
[ OK ] FidoMatrixTest.PackedMatrix (0 ms)
[ RUN ] FidoMatrixTest.solveInPlace
[ OK ] FidoMatrixTest.solveInPlace (0 ms)
[----------] 2 tests from FidoMatrixTest (0 ms total)
[----------] Global test environment tear-down
[==========] 33 tests from 9 test suites ran. (47 ms total)
[ PASSED ] 31 tests.
[ FAILED ] 2 tests, listed below:
[ FAILED ] DataSetTest.CheckFeatureParsing
[ FAILED ] TabReaderTest.CheckReadInt
2 FAILED TESTS
0% tests passed, 1 tests failed out of 1
Total Test time (real) = 0.06 sec
The following tests FAILED:
1 - UnitTest_Percolator_RunAllTests (Failed)
percolator is compiled in Fedora 39 (devel branch) with GCC-13.1.1
Full build log: https://kojipkgs.fedoraproject.org//work/tasks/5267/102275267/build.log
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