8000 msgf2pin error: "basic_string::_M_construct null not valid" · Issue #390 · percolator/percolator · GitHub
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msgf2pin error: "basic_string::_M_construct null not valid" #390

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jsialar opened this issue May 12, 2025 · 0 comments
Open

msgf2pin error: "basic_string::_M_construct null not valid" #390

jsialar opened this issue May 12, 2025 · 0 comments

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@jsialar
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jsialar commented May 12, 2025 •
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I ran msgf2 (v2024.03.26) separately on a target and decoy database without the internal target/decoy
analysis enabled and with the addFeatures options turned on to generate target.msgf.mzid and decoy.msgf.mzid respectively. I then ran msgf2pin but encountered an error that says "basic_string::_M_construct null not valid" as seen below.
I have supplied "REVERSED" to the --pattern parameter because my decoy names are prepended with "REVERSED_".

Output:

Issued command:
msgf2pin -v 5 --pattern REVERSED -o test.pin target.msgf.mzid decoy.msgf.mzid 

MzIdentML - MSGF+ format
Uses features for fragment spectra mass errors
MzIdentML - MSGF+ format
basic_string::_M_construct null not valid
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