QuaDBio Lab
- 74 followers 8000
- Switzerland
- https://bsse.ethz.ch/qdb
- @TreutleinLab
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scRNAseq_analysis_vignette
scRNAseq_analysis_vignette PublicTutorial for scRNA-seq data analysis beginners using R
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scMultiome_analysis_vignette
scMultiome_analysis_vignette PublicTutorial of single-cell RNA-ATAC multiomic sequencing data analysis
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primate_cerebral_organoids
primate_cerebral_organoids PublicReusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain development" (https://www.nature.com/articles/s41586-019-1654-9)
Repositories
- cellmapper Public
k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.
quadbio/cellmapper’s past year of commit activity - sopa Public Forked from gustaveroussy/sopa
Technology-invariant pipeline for spatial omics analysis (Xenium / MERSCOPE / CosMx / PhenoCycler / MACSima / Hyperion) that scales to millions of cells
quadbio/sopa’s past year of commit activity - ecosystem-packages Public Forked from scverse/ecosystem-packages
Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
quadbio/ecosystem-packages’s past year of commit activity - iNeuron_morphogens Public
quadbio/iNeuron_morphogens’s past year of commit activity - scib-metrics Public Forked from YosefLab/scib-metrics
Accelerated, Python-only, single-cell integration benchmarking metrics
quadbio/scib-metrics’s past year of commit activity - simple_slurm Public Forked from amq92/simple_slurm
A simple Python wrapper for Slurm with flexibility in mind.
quadbio/simple_slurm’s past year of commit activity
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