8000 Support EDNAFULL and f32 gap scoring. · Issue #619 · rust-bio/rust-bio · GitHub
[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
Skip to content
Support EDNAFULL and f32 gap scoring. #619
Open
@rLannes

Description

@rLannes

Hi,

Currently, only protein scoring matrices are supported.
I would like to add the EDNAFULL matrix (a DNA scoring matrix that support all IUPAC character) is that something you will be interested in as a pull request?
Furthermore, it is not rare to have decimal gap extension penalty, such as -0.5.
At the moment this is not directly supported (aligner expect an i32).
A workaround is to multiply every score by 10. While a breaking change, this allows for an easier use. Is there any reasons you choose to use i32 instead of float for the scoring?

Best regards,
Romain

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions

      0