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Description
Simple devtools::check() gives error below, but running the functions outside the test does work:
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-phylomatic.R:20:2): ph_phylomatic works with chr string input ───
Error: Program '/private/var/folders/ss/2tpkp325521_kfgn59g44vd80000gn/T/RtmptTM9Ev/phylocomr.Rcheck/phylocomr/bin//phylomatic' terminated by SIGNAL (Trace/BPT trap: 5)
Backtrace:
▆
1. └─phylocomr::ph_phylomatic(taxa = taxa_str, phylo = phylo_str) at test-phylomatic.R:20:1
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─phylocomr::phylomatic(...)
5. └─phylocomr:::run("phylomatic", args, intern)
6. └─sys::exec_internal(path, args, error = FALSE)
7. └─sys::exec_wait(...)
8. └─sys:::execute(...)Running the following from RStudio or R command line works:
taxa_file <- system.file("examples/taxa", package = "phylocomr")
phylo_file <- system.file("examples/phylo", package = "phylocomr")
taxa_str <- readLines(taxa_file)
phylo_str <- readLines(phylo_file)
aa <- ph_phylomatic(taxa = taxa_str, phylo = phylo_str)
Session Info
> sessionInfo()
R version 4.2.0 (2022-04-22)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Monterey 12.6
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_4.2.0Metadata
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