medical
This Repo Will contain the Preprocessing Code for 3D Medical Imaging
Develop dose prediction models for knowledge-based planning in radiotherapy
A GUI toolkit for visualizing and performing toxicity modelling using Dose Volume Histogram files
A library of core radiation therapy modules for DICOM RT used by dicompyler
Jupyter notebooks for learning how to use SimpleITK
A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.
SOTA medical image segmentation methods based on various challenges
Medical image registration related books, tutorials, papers, datasets, toolboxes and deep learning open source codes
Tool for robust segmentation of >100 important anatomical structures in CT and MR images
TIGRE: Tomographic Iterative GPU-based Reconstruction Toolbox
MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemic TB whole-person research.The pipeline is based on nn-UNet …
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on d…
Code for "DeepDRR: A Catalyst for Machine Learning in Fluoroscopy-guided Procedures". https://arxiv.org/abs/1803.08606
[ICCV 2023] A curated list of resources on implicit neural representations in Medical Imaging
This is a TOPAS-based Monte Carlo package to help enable the simulation of pencil beam scanning proton therapy beamlines and collimation devices.
TOPAS model of the Clatterbridge Cancer Centre, UK 60 MeV Ocular Proton Therapy Beamline
This is a set of functions for generating digitally reconstructe 8F3A d radiographs from CT data
High-level DICOM abstractions for the Python programming language
comprehensive library of 3D transmission Computed Tomography (CT) algorithms with Python and C++ APIs, a PyQt GUI, and fully integrated with PyTorch
an image registration/augmentation/segmentation package
GPU and CPU implementation of LDDMM image registration
A comprehensive list of papers on learning-based image registration, as well as python implementation of various loss functions and evaluation metrics for medical image registration
[ICCV 2023] CLIP-Driven Universal Model; Rank first in MSD Competition.
Michigan Image Reconstruction Toolbox (MIRT) - Matlab version