🐍 Python
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
Library for manipulating genomic variants and predicting their effects
AlphaLink: Integrating crosslinking MS data into OpenFold
A dependency-free cross-platform swiss army knife for PDB files.
Fast and flexible semi-supervised learning for peptide detection in Python
Convert scans of handwritten notes to beautiful, compact PDFs
🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
abusing github commit history for the lulz
A machine learning-based video super resolution and frame interpolation framework. Est. Hack the Valley II, 2018.
A website displaying hundreds of charts made with Python
🐝 Awesome R and Python packages offering extended UI or server components for the web framework Shiny
Linked Data Visualizations Across Multiple Files
Visualization of search interest over time
Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common t…
Extensions for better usability of the cross-linking tool MaXLinker.
Official repo of the modular BioExcel version of HADDOCK
Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019"…
Chronolapse makes it easy to record screenshots and camera captures on a schedule then combine them into timelapse videos.
Derive ΔG for single residues from HDX-MS data
A deep learning toolkit for mass spectrometry
pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning
A tool to calculate the solvent accessible surface distance (SASD) between crosslinked residues.