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aimd

18 repositories

A tiny package to compute the dynamics of stochastic and molecular simulations

Python 27 4 Updated Jul 11, 2023

Code to analyze molecular dynamics trajectory

C++ 18 4 Updated Nov 13, 2024

pyiron - an integrated development environment (IDE) for computational materials science.

Jupyter Notebook 400 51 Updated Apr 30, 2025

A simple and fast python library to handle the data generated from molecular dynamics simulations

Python 73 11 Updated Jan 13, 2025

This add-on to pymatgen provides tools for analyzing diffusion in materials.

Python 118 57 Updated May 5, 2025

MD2D: a python module for accurate determination of diffusion coefficient from molecular dynamics

Python 21 5 Updated Feb 17, 2023

XDATCAR_toolkit- A tool for convert XDATCAR to PDB

HTML 60 22 Updated May 30, 2019
Jupyter Notebook 67 12 Updated May 4, 2023
Jupyter Notebook 2 Updated Jan 21, 2025

Tools for analysing molecular dynamics simulations using site occupations

Python 16 4 Updated May 13, 2025
Python 50 15 Updated Jul 19, 2022

A Python suite for manipulating VASP input and output

Python 46 26 Updated Jun 21, 2024

A Python package for estimating diffusion properties from molecular dynamics simulations.

Python 66 12 Updated Apr 29, 2025

Unsupervised landmark analysis for jump detection in molecular dynamics simulations.

Python 13 6 Updated Jan 12, 2021

An open library for the analysis of molecular dynamics trajectories

Python 635 288 Updated May 12, 2025

Python interface for the zeo++ package

C++ 10 5 Updated Aug 20, 2024

zeo++ fork of the LSMO

C++ 14 1 Updated Dec 19, 2022

Python tools to handle CP2K output files

Python 39 18 Updated May 12, 2025
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