TCGA
Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.
Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-seq sequencing data for 32 TCGA cancers (Poore et al. Nature 2…
The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from cancer-specific splicing events (neojunctions). The code avai…
Identification and verification of a novel signature that combines cuproptosis-related genes with ferroptosis-related genes in osteoarthritis using bioinformatics and machine learning
R code for synergetic LUAD miRNA signature analysis with Bayesian inference and machine learning approach
Code for: Circulating Cell-Free RNA in Blood as a Host Response Biomarker for the Detection of Tuberculosis
Probing metabolomic profile of breast cancer combined with protein expression via machine learning approach