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Description
cut is used to split id1_L001_R1_001.fastq.gz by _ to get the sample ID.
ls *R1* | cut -d _ -f 1 | sort | uniq \
| while read id; do \
cat $id*R1*.fastq.gz > $id.R1.fastq.gz;
cat $id*R2*.fastq.gz > $id.R2.fastq.gz;
done
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