8000 Commits · svviz/svviz · GitHub

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Commits

Commits on Aug 18, 2018

Linking to svviz2
nspies
authored

Commits on Aug 17, 2017

updating version to 1.6.2
nspies
committed
Merge branch 'master' of github.com:svviz/svviz
nspies
committed

Commits on Jun 27, 2017

fixing regression caused by python3 upgrade which made it impossible to download the demo from python2; closes #49
Noah Spies
committed

Commits on Jun 2, 2017

minor updates; bumping version
nspies
committed

Commits on May 16, 2017

updating version number to 1.6.1
Noah Spies
committed
adding number of processes to progress bar when there isn't room for each process's progress bar
Noah Spies
committed
fixing multi-progress bars when window is too short to fit a bar per process
nspies
committed

Commits on Feb 8, 2017

fixing bug with alignproc and --fast
Noah Spies
committed

Commits on Feb 1, 2017

fixed dotplots to work under python3
nspies
committed

Commits on Jan 31, 2017

separating out error-checking for yass from the rest of the dotplot code (which runs rpy2)
Noah Spies
committed

Commits on Jan 20, 2017

adding a --fast mode which increases speed ~2x when running on Illumina data but doesn't calculate 2nd best hits as exactly so differences will occur in the count of ambiguously mapping reads
Noah Spies
committed

Commits on Dec 7, 2016

fixing python2/3 compatibility issue in pacbio wrapper
Noah Spies
committed

Commits on Dec 6, 2016

fixing bug with print statement in python 2.7 when running longread wrapper mode
Noah Spies
committed

Commits on Nov 15, 2016

complex insertions now print the length of the deleted segment
Noah Spies
committed
merge news
Noah Spies
committed

Commits on Nov 4, 2016

updating docs
Noah Spies
committed
updating docs
Noah Spies
committed
updating docs
Noah Spies
committed
adding footer to docs
Noah Spies
committed

Commits on Oct 18, 2016

adding python 3.x compatibility
Noah Spies
committed

Commits on Oct 17, 2016

removing unnecessary debugging output
Noah Spies
committed
pushing 1.5.3
Noah Spies
committed
updating changelog
Noah Spies
committed
added option to output file with the insert size distribution plots; closes #39
Noah Spies
committed
produces a useful error message when the reference fasta file is not provided; closes #31
Noah Spies
committed
now outputs progress every 30 seconds when not in tty; closes #22
Noah Spies
committed
updating version number
Noah Spies
committed
moving example data to github pages
Noah Spies
committed

Commits on Aug 23, 2016

adding an error message if the user is trying to combine additinal arguments with a demo run
Noah Spies
committed

Commits on Aug 5, 2016

restoring --max-reads option
Noah Spies
committed
updating to version 1.5.1
Noah Spies
committed

Commits on Aug 4, 2016

removing joblib dependency
Noah Spies
committed

Commits on Jun 30, 2016

fixed bug that loaded all reads near to a mate pair read
Noah Spies
committed

Commits on Jun 28, 2016

disabling --max-reads option (at least for now)
Noah Spies
committed

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