8000 Question regarding the zscore matrix · Issue #953 · scverse/squidpy · GitHub
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Question regarding the zscore matrix #953
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Question regarding the zscore matrix#953
@Huimin721

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@Huimin721
Huimin721
opened on Feb 14, 2025

Dear team,

Thanks so much for developing the outstanding tool. I have two qeustions regarding adata.uns['cell_type_nhood_enrichment']['zscore'].

  1. Are the rownames and colnames of the zscore matrix
    adata.obs["celltype"].cat.categories.tolist()
    ?
  2. what is the difference between Acluster(row)--Bcluster(column) and Acluster(column)--Bcluster(row)?

Thanks so much and please let me know if this is not clear.

Best,
Huimin

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