8000 Leverage Pre-Existing Annotations for Analysis · Issue #998 · scverse/squidpy · GitHub
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Leverage Pre-Existing Annotations for Analysis #998
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@abadgerw

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@abadgerw

I have pre-annotated regions that I drew on a full resolution slide scanned image in QuPath and exported them as geoJSON files.

I want to see if these be loaded directly using squidpy so that I may segment regions by annotation for DE of my Visium data?

I tried using Seurat (see here with example data: satijalab/seurat#9448) but was having issues being able to do this and wanted to see if squidpy would be able to do so.

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