8000 Errors while using kraken-biom · Issue #17 · smdabdoub/kraken-biom · GitHub
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Errors while using kraken-biom #17

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pdhrati02 opened this issue Feb 1, 2022 · 0 comments
Open

Errors while using kraken-biom #17

pdhrati02 opened this issue Feb 1, 2022 · 0 comments

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@pdhrati02
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Hi, I used pip install git+http://github.com/smdabdoub/kraken-biom.git
Following which I tried kraken-biom on 2 samples for trial:
kraken-biom C1C_S92_krak_out.txt C1T1_S39_krak_out.txt and also
kraken-biom C1C_S92_krakenreport.txt C1T1_S39_krakenreport.txt

In both cases I ended up getting the following error:
TypeError: expected string or bytes-like object

My kraken report file is a mpa style file while the output is standard format.

Any help would be appreciated. Thank you.
DP
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