8000 Centroid model is not generating metrics files · Issue #599 · talmolab/sleap · GitHub
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Centroid model is not generating metrics files #599
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@mittner7

Description

@mittner7

Hello,
I'm trying to run analysis on my models, but the centroid model does not contain metrics files.
I'm running version 1.1.5 and using Colab for training and predicting. My centered_instance file does contain the metrics, and when running previous versions I saw them in centroid as well.

`models/centroid2
├── best_model.h5
├── initial_config.json
├── labels_gt.train.slp
├── labels_gt.val.slp
├── train
│ ├── events.out.tfevents.1634938180.91c71cefa6b6.1995.3493.v2
│ └── events.out.tfevents.1634938185.91c71cefa6b6.1995.7280.v2
├── training_config.json
├── training_log.csv
└── validation
├── events.out.tfevents.1634938180.91c71cefa6b6.1995.3501.v2
└── events.out.tfevents.1634938251.91c71cefa6b6.1995.15839.v2

2 directories, 10 files`

{ "data": { "labels": { "training_labels": null, "validation_labels": null, "validation_fraction": 0.1, "test_labels": null, "search_path_hints": [], "skeletons": [] }, "preprocessing": { "ensure_rgb": false, "ensure_grayscale": false, "imagenet_mode": null, "input_scaling": 0.5, "pad_to_stride": null }, "instance_cropping": { "center_on_part": null, "crop_size": 160, "crop_size_detection_padding": 16 } }, "model": { "backbone": { "leap": null, "unet": { "stem_stride": null, "max_stride": 16, "output_stride": 2, "filters": 16, "filters_rate": 2.0, "middle_block": true, "up_interpolate": true, "stacks": 1 }, "hourglass": null, "resnet": null }, "heads": { "single_instance": null, "centroid": { "anchor_part": "", "sigma": 5.0, "output_stride": 2 }, "centered_instance": null, "multi_instance": null } }, "optimization": { "preload_data": true, "augmentation_config": { "rotate": true, "rotation_min_angle": -180.0, "rotation_max_angle": 180.0, "translate": false, "translate_min": -5, "translate_max": 5, "scale": false, "scale_min": 0.9, "scale_max": 1.1, "uniform_noise": false, "uniform_noise_min_val": 0.0, "uniform_noise_max_val": 10.0, "gaussian_noise": false, "gaussian_noise_mean": 5.0, "gaussian_noise_stddev": 1.0, "contrast": false, "contrast_min_gamma": 0.5, "contrast_max_gamma": 2.0, "brightness": false, "brightness_min_val": 0.0, "brightness_max_val": 10.0 }, "online_shuffling": true, "shuffle_buffer_size": 128, "prefetch": true, "batch_size": 4, "batches_per_epoch": null, "min_batches_per_epoch": 200, "val_batches_per_epoch": null, "min_val_batches_per_epoch": 10, "epochs": 200, "optimizer": "adam", "initial_learning_rate": 0.0001, "learning_rate_schedule": { "reduce_on_plateau": true, "reduction_factor": 0.5, "plateau_min_delta": 1e-06, "plateau_patience": 5, "plateau_cooldown": 3, "min_learning_rate": 1e-08 }, "hard_keypoint_mining": { "online_mining": false, "hard_to_easy_ratio": 2.0, "min_hard_keypoints": 2, "max_hard_keypoints": null, "loss_scale": 5.0 }, "early_stopping": { "stop_training_on_plateau": true, "plateau_min_delta": 1e-06, "plateau_patience": 10 } }, "outputs": { "save_outputs": true, "run_name": "211011_144622", "run_name_prefix": "", "run_name_suffix": "", "runs_folder": "", "tags": [ "" ], "save_visualizations": true, "log_to_csv": true, "checkpointing": { "initial_model": false, "best_model": true, "every_epoch": false, "latest_model": false, "final_model": false }, "tensorboard": { "write_logs": true, "loss_frequency": "epoch", "architecture_graph": false, "profile_graph": false, "visualizations": true }, "zmq": { "subscribe_to_controller": false, "controller_address": "tcp://127.0.0.1:9000", "controller_polling_timeout": 10, "publish_updates": false, "publish_address": "tcp://127.0.0.1:9001" } } }

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