Closed
Description
Bug description
Some of my videos only have 1 or 2 frames but most have 72. I would like to generate sample suggestions on everything with more than the number of samples I would like.
Expected behaviour
I generate (20) sample suggestions using the stride method. Only videos with more than 20 frames would have the sample suggestions generated.
Actual behaviour
Initializing sample suggestions window appears and value error is shown on command prompt. Nothing happens.
Your personal set up
Versions:
SLEAP: 1.2.1
TensorFlow: 2.8.0
Numpy: 1.21.5
Python: 3.7.13
OS: Windows-10-10.0.19041-SP0
System:
GPUs: 1/1 available
Device: /physical_device:GPU:0
Available: True
Initalized: False
Memory growth: True
- SLEAP installation method (listed here):
Environment packages
# packages in environment at C:\Users\Elizabeth\.conda\envs\sleap_develop:
#
# Name Version Build Channel
absl-py 1.0.0 pypi_0 pypi
alabaster 0.7.12 pypi_0 pypi
anyio 3.5.0 pypi_0 pypi
appdirs 1.4.4 pypi_0 pypi
argon2-cffi 21.3.0 pypi_0 pypi
argon2-cffi-bindings 21.2.0 pypi_0 pypi
astunparse 1.6.3 pypi_0 pypi
atomicwrites 1.4.0 pypi_0 pypi
attrs 21.2.0 pypi_0 pypi
babel 2.9.1 pypi_0 pypi
backcall 0.2.0 pypi_0 pypi
backports-zoneinfo 0.2.1 pypi_0 pypi
beautifulsoup4 4.10.0 pypi_0 pypi
black 21.6b0 pypi_0 pypi
bleach 4.1.0 pypi_0 pypi
ca-certificates 2022.3.29 haa95532_0
cached-property 1.5.2 py_0
cachetools 5.0.0 pypi_0 pypi
cattrs 1.1.1 pypi_0 pypi
certifi 2021.10.8 py37haa95532_2
cffi 1.15.0 pypi_0 pypi
cfgv 3.3.1 pypi_0 pypi
charset-normalizer 2.0.12 pypi_0 pypi
click 8.0.4 pypi_0 pypi
colorama 0.4.4 pypi_0 pypi
commonmark 0.9.1 pypi_0 pypi
coverage 6.3.2 pypi_0 pypi
cuda-nvcc 11.3.58 hb8d16a4_0 nvidia
cudatoolkit 11.3.1 h59b6b97_2
cudnn 8.2.1 cuda11.3_0
cycler 0.11.0 pypi_0 pypi
debugpy 1.6.0 pypi_0 pypi
decorator 5.1.1 pypi_0 pypi
defusedxml 0.7.1 pypi_0 pypi
deprecated 1.2.13 pypi_0 pypi
distlib 0.3.4 pypi_0 pypi
docutils 0.17.1 pypi_0 pypi
efficientnet 1.0.0 pypi_0 pypi
entrypoints 0.4 pypi_0 pypi
ffmpeg 4.2.2 he774522_0
filelock 3.6.0 pypi_0 pypi
flatbuffers 2.0 pypi_0 pypi
fonttools 4.31.2 pypi_0 pypi
freetype 2.10.4 hd328e21_0
gast 0.5.3 pypi_0 pypi
geos 3.8.0 h33f27b4_0
gitdb 4.0.9 pypi_0 pypi
gitpython 3.1.27 pypi_0 pypi
google-auth 2.6.2 pypi_0 pypi
google-auth-oauthlib 0.4.6 pypi_0 pypi
google-pasta 0.2.0 pypi_0 pypi
greenlet 1.1.2 pypi_0 pypi
grpcio 1.44.0 pypi_0 pypi
h5py 3.6.0 nompi_py37h2502845_100 conda-forge
hdf5 1.12.1 nompi_h2a0e4a3_103 conda-forge
icu 69.1 h0e60522_0 conda-forge
identify 2.4.12 pypi_0 pypi
idna 3.3 pypi_0 pypi
image-classifiers 1.0.0 pypi_0 pypi
imageio 2.15.0 pypi_0 pypi
imagesize 1.3.0 pypi_0 pypi
imgaug 0.4.0 pypi_0 pypi
imgstore 0.2.9 pypi_0 pypi
importlib-metadata 4.11.3 pypi_0 pypi
importlib-resources 5.6.0 pypi_0 pypi
iniconfig 1.1.1 pypi_0 pypi
intel-openmp 2022.0.0 haa95532_3663
ipykernel 6.11.0 pypi_0 pypi
ipython 7.32.0 pypi_0 pypi
ipython-genutils 0.2.0 pypi_0 pypi
ipywidgets 7.7.0 pypi_0 pypi
jedi 0.17.2 pypi_0 pypi
jinja2 3.1.1 pypi_0 pypi
joblib 1.1.0 pypi_0 pypi
jpeg 9e h8ffe710_0 conda-forge
jsmin 3.0.1 pypi_0 pypi
json5 0.9.6 pypi_0 pypi
jsonpickle 1.2 pypi_0 pypi
jsonschema 4.4.0 pypi_0 pypi
jupyter-cache 0.4.3 pypi_0 pypi
jupyter-client 7.2.1 pypi_0 pypi
jupyter-core 4.9.2 pypi_0 pypi
jupyter-server 1.13.5 pypi_0 pypi
jupyter-server-mathjax 0.2.5 pypi_0 pypi
jupyter-sphinx 0.3.2 pypi_0 pypi
jupyterlab 3.3.2 pypi_0 pypi
jupyterlab-pygments 0.1.2 pypi_0 pypi
jupyterlab-server 2.12.0 pypi_0 pypi
jupyterlab-widgets 1.1.0 pypi_0 pypi
keras 2.8.0 pypi_0 pypi
keras-applications 1.0.8 pypi_0 pypi
keras-preprocessing 1.1.2 pypi_0 pypi
keyring 23.5.0 pypi_0 pypi
kiwisolver 1.4.2 pypi_0 pypi
libblas 3.8.0 20_mkl conda-forge
libcblas 3.8.0 20_mkl conda-forge
libclang 13.0.0 pypi_0 pypi
libcurl 7.80.0 h86230a5_0
libiconv 1.15 h1df5818_7
liblapack 3.8.0 20_mkl conda-forge
libpng 1.6.37 h2a8f88b_0
libssh2 1.9.0 h7a1dbc1_1
libtiff 4.2.0 hd0e1b90_0
libwebp 1.2.2 h2bbff1b_0
libxml2 2.9.12 h0ad7f3c_0
libxslt 1.1.34 he774522_0
libzlib 1.2.11 h8ffe710_1014 conda-forge
linkify-it-py 1.0.3 pypi_0 pypi
livereload 2.6.3 pypi_0 pypi
lz4-c 1.9.3 h2bbff1b_1
m2w64-gcc-libgfortran 5.3.0 6
m2w64-gcc-libs 5.3.0 7
m2w64-gcc-libs-core 5.3.0 7
m2w64-gmp 6.1.0 2
m2w64-libwinpthread-git 5.0.0.4634.697f757 2
markdown 3.3.6 pypi_0 pypi
markdown-it-py 1.1.0 pypi_0 pypi
markupsafe 2.1.1 pypi_0 pypi
matplotlib 3.5.1 pypi_0 pypi
matplotlib-inline 0.1.3 pypi_0 pypi
mdit-py-plugins 0.2.8 pypi_0 pypi
mistune 0.8.4 pypi_0 pypi
mkl 2020.2 256
msys2-conda-epoch 20160418 1
mypy-extensions 0.4.3 pypi_0 pypi
myst-nb 0.13.2 pypi_0 pypi
myst-parser 0.15.2 pypi_0 pypi
nbclassic 0.3.7 pypi_0 pypi
nbclient 0.5.13 pypi_0 pypi
nbconvert 6.4.5 pypi_0 pypi
nbdime 3.1.1 pypi_0 pypi
nbformat 5.1.3 pypi_0 pypi
nest-asyncio 1.5.5 pypi_0 pypi
networkx 2.6.3 pypi_0 pypi
nodeenv 1.6.0 pypi_0 pypi
notebook 6.4.10 pypi_0 pypi
notebook-shim 0.1.0 pypi_0 pypi
numpy 1.21.5 py37h5fa1a60_0 conda-forge
oauthlib 3.2.0 pypi_0 pypi
olefile 0.46 py37_0
opencv-python 4.5.5.64 pypi_0 pypi
opencv-python-headless 4.5.5.62 pypi_0 pypi
openssl 1.1.1n h2bbff1b_0
opt-einsum 3.3.0 pypi_0 pypi
packaging 21.3 pypi_0 pypi
pandas 1.3.5 py37h9386db6_0 conda-forge
pandocfilters 1.5.0 pypi_0 pypi
parso 0.7.1 pypi_0 pypi
pathspec 0.9.0 pypi_0 pypi
patsy 0.5.2 pypi_0 pypi
pickleshare 0.7.5 pypi_0 pypi
pillow 8.4.0 py37hd45dc43_0
pip 21.2.4 py37haa95532_0
pkginfo 1.8.2 pypi_0 pypi
platformdirs 2.5.1 pypi_0 pypi
pluggy 1.0.0 pypi_0 pypi
pre-commit 2.17.0 pypi_0 pypi
prometheus-client 0.13.1 pypi_0 pypi
prompt-toolkit 3.0.28 pypi_0 pypi
protobuf 3.20.0 pypi_0 pypi
psutil 5.9.0 pypi_0 pypi
py 1.11.0 pypi_0 pypi
pyasn1 0.4.8 pypi_0 pypi
pyasn1-modules 0.2.8 pypi_0 pypi
pycparser 2.21 pypi_0 pypi
pydata-sphinx-theme 0.8.1 pypi_0 pypi
pygithub 1.55 pypi_0 pypi
pygments 2.11.2 pypi_0 pypi
pyjwt 2.3.0 pypi_0 pypi
pykalman 0.9.5 pypi_0 pypi
pynacl 1.5.0 pypi_0 pypi
pyparsing 3.0.7 pypi_0 pypi
pyrsistent 0.18.1 pypi_0 pypi
pyside2 5.14.1 pypi_0 pypi
pytest 7.1.1 pypi_0 pypi
pytest-cov 3.0.0 pypi_0 pypi
pytest-qt 4.0.2 pypi_0 pypi
pytest-xvfb 2.0.0 pypi_0 pypi
python 3.7.13 h6244533_0
python-dateutil 2.8.2 pyhd3eb1b0_0
python-rapidjson 1.6 pypi_0 pypi
python_abi 3.7 2_cp37m conda-forge
pytz 2021.3 pyhd3eb1b0_0
pytz-deprecation-shim 0.1.0.post0 pypi_0 pypi
pyvirtualdisplay 3.0 pypi_0 pypi
pywavelets 1.3.0 pypi_0 pypi
pywin32 303 pypi_0 pypi
pywin32-ctypes 0.2.0 pypi_0 pypi
pywinpty 1.1.6 pypi_0 pypi
pyyaml 6.0 pypi_0 pypi
pyzmq 22.3.0 pypi_0 pypi
qimage2ndarray 1.8.3 pypi_0 pypi
qt 5.12.9 h556501e_6 conda-forge
readme-renderer 34.0 pypi_0 pypi
regex 2022.3.15 pypi_0 pypi
requests 2.27.1 pypi_0 pypi
requests-oauthlib 1.3.1 pypi_0 pypi
requests-toolbelt 0.9.1 pypi_0 pypi
rfc3986 2.0.0 pypi_0 pypi
rich 10.16.1 pypi_0 pypi
rsa 4.8 pypi_0 pypi
scikit-image 0.19.2 pypi_0 pypi
scikit-learn 1.0.2 pypi_0 pypi
scikit-video 1.1.11 pypi_0 pypi
scipy 1.7.3 py37hb6553fb_0 conda-forge
seaborn 0.11.2 pypi_0 pypi
segmentation-models 1.0.1 pypi_0 pypi
send2trash 1.8.0 pypi_0 pypi
setuptools 61.3.1 pypi_0 pypi
shapely 1.7.1 py37h06580b3_0
shiboken2 5.14.1 pypi_0 pypi
six 1.16.0 pyhd3eb1b0_1
sleap 1.2.1 dev_0 <develop>
smmap 5.0.0 pypi_0 pypi
sniffio 1.2.0 pypi_0 pypi
snowballstemmer 2.2.0 pypi_0 pypi
soupsieve 2.3.1 pypi_0 pypi
sphinx 4.5.0 pypi_0 pypi
sphinx-autobuild 2021.3.14 pypi_0 pypi
sphinx-book-theme 0.3.2 pypi_0 pypi
sphinx-copybutton 0.5.0 pypi_0 pypi
sphinx-togglebutton 0.3.1 pypi_0 pypi
sphinxcontrib-applehelp 1.0.2 pypi_0 pypi
sphinxcontrib-devhelp 1.0.2 pypi_0 pypi
sphinxcontrib-htmlhelp 2.0.0 pypi_0 pypi
sphinxcontrib-jsmath 1.0.1 pypi_0 pypi
sphinxcontrib-qthelp 1.0.3 pypi_0 pypi
sphinxcontrib-serializinghtml 1.1.5 pypi_0 pypi
sqlalchemy 1.4.34 pypi_0 pypi
sqlite 3.38.2 h2bbff1b_0
statsmodels 0.13.2 pypi_0 pypi
tensorboard 2.8.0 pypi_0 pypi
tensorboard-data-server 0.6.1 pypi_0 pypi
tensorboard-plugin-wit 1.8.1 pypi_0 pypi
tensorflow 2.8.0 pypi_0 pypi
tensorflow-io-gcs-filesystem 0.24.0 pypi_0 pypi
termcolor 1.1.0 pypi_0 pypi
terminado 0.13.3 pypi_0 pypi
testpath 0.6.0 pypi_0 pypi
tf-estimator-nightly 2.8.0.dev2021122109 pypi_0 pypi
threadpoolctl 3.1.0 pypi_0 pypi
tifffile 2021.11.2 pypi_0 pypi
tk 8.6.11 h2bbff1b_0
toml 0.10.2 pypi_0 pypi
tomli 2.0.1 pypi_0 pypi
tornado 6.1 pypi_0 pypi
tqdm 4.63.1 pypi_0 pypi
traitlets 5.1.1 pypi_0 pypi
twine 3.3.0 pypi_0 pypi
typed-ast 1.5.2 pypi_0 pypi
typing-extensions 4.1.1 pypi_0 pypi
tzdata 2022.1 pypi_0 pypi
tzlocal 4.2 pypi_0 pypi
uc-micro-py 1.0.1 pypi_0 pypi
urllib3 1.26.9 pypi_0 pypi
vc 14.2 h21ff451_1
virtualenv 20.14.0 pypi_0 pypi
vs2015_runtime 14.27.29016 h5e58377_2
wcwidth 0.2.5 pypi_0 pypi
webencodings 0.5.1 pypi_0 pypi
websocket-client 1.3.2 pypi_0 pypi
werkzeug 2.1.1 pypi_0 pypi
wheel 0.37.1 pyhd3eb1b0_0
widgetsnbextension 3.6.0 pypi_0 pypi
wincertstore 0.2 py37haa95532_2
wrapt 1.14.0 pypi_0 pypi
xz 5.2.5 h62dcd97_0
zipp 3.7.0 pypi_0 pypi
zlib 1.2.11 h8ffe710_1014 conda-forge
zstd 1.4.9 h19a0ad4_0
Logs
Traceback (most recent call last):
File "c:\users\elizabeth\desktop\sleap_develop\sleap\gui\app.py", line 874, in wrapped_function
action(*args)
File "c:\users\elizabeth\desktop\sleap_develop\sleap\gui\commands.py", line 541, in generateSuggestions
self.execute(GenerateSuggestions, **params)
File "c:\users\elizabeth\desktop\sleap_develop\sleap\gui\commands.py", line 236, in execute
command().execute(context=self, params=kwargs)
File "c:\users\elizabeth\desktop\sleap_develop\sleap\gui\commands.py", line 133, in execute
self.do_with_signal(context, params)
File "c:\users\elizabeth\desktop\sleap_develop\sleap\gui\commands.py", line 157, in do_with_signal
cls.do_action(context, params)
File "c:\users\elizabeth\desktop\sleap_develop\sleap\gui\commands.py", line 2024, in do_action
labels=context.labels, params=params
File "c:\users\elizabeth\desktop\sleap_develop\sleap\gui\suggestions.py", line 67, in suggest
return method_functions[method](labels=labels, **params)
File "c:\users\elizabeth\desktop\sleap_develop\sleap\gui\suggestions.py", line 84, in basic_sample_suggestion_method
range(0, video.frames, video.frames // per_video)
ValueError: range() arg 3 must not be zero
Screenshots
How to reproduce
- Go to 'Generate Suggestions'
- Click on 'Method'
- Scroll down to 'Stride'
- Click 'Generate Suggestions'
- Initializing sample suggestions shows and value error is given in the command prompt