From 972e9f092de96ec6af9da738bb6c154b51892f55 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Sun, 12 May 2024 19:59:55 -0700
Subject: [PATCH 1/3] update python to 3.11

---
 README.md       | 2 +-
 environment.yml | 2 +-
 pyproject.toml  | 4 +++-
 3 files changed, 5 insertions(+), 3 deletions(-)

diff --git a/README.md b/README.md
index a2a8880..ed835d6 100644
--- a/README.md
+++ b/README.md
@@ -14,7 +14,7 @@ pip install sleap-roots
 
 If you are using conda (recommended):
 ```
-conda create -n sleap-roots python=3.9
+conda create -n sleap-roots python=3.11
 conda activate sleap-roots
 pip install sleap-roots
 ```
diff --git a/environment.yml b/environment.yml
index bf812d9..cd0a124 100644
--- a/environment.yml
+++ b/environment.yml
@@ -5,7 +5,7 @@ channels:
   - defaults
 
 dependencies:
-  - python=3.9
+  - python=3.11
   - numpy
   - matplotlib
   - seaborn
diff --git a/pyproject.toml b/pyproject.toml
index 6478b13..62a4743 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -16,7 +16,9 @@ license = {text = "BSD-3-Clause"}
 classifiers = [
     "Programming Language :: Python :: 3.7",
     "Programming Language :: Python :: 3.8",
-    "Programming Language :: Python :: 3.9"
+    "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11"
 ]
 dependencies = [
     "numpy",

From a8d4ffab18efaf786a355b7f7b22e0a158e0d05c Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Sun, 12 May 2024 20:01:15 -0700
Subject: [PATCH 2/3] bump version because of (breaking) major changes

---
 sleap_roots/__init__.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sleap_roots/__init__.py b/sleap_roots/__init__.py
index 7b0b898..b7a4977 100644
--- a/sleap_roots/__init__.py
+++ b/sleap_roots/__init__.py
@@ -29,4 +29,4 @@
 
 # Define package version.
 # This is read dynamically by setuptools in pyproject.toml to determine the release version.
-__version__ = "0.0.9"
+__version__ = "0.1.0"

From b914b43ab5474b36f64e9336a539b433308b5e87 Mon Sep 17 00:00:00 2001
From: Elizabeth Berrigan <berri104@gmail.com>
Date: Sun, 12 May 2024 20:12:23 -0700
Subject: [PATCH 3/3] update ci and build to python 3.11

---
 .github/workflows/build.yml |  2 +-
 .github/workflows/ci.yml    | 10 +++++-----
 2 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index 16bdc1d..ed1c281 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -18,7 +18,7 @@ jobs:
     - name: Set up Python
       uses: actions/setup-python@v4
       with:
-        python-version: 3.9
+        python-version: 3.11
 
     - name: Install dependencies
       run: |
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index f753400..f627f8f 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -38,7 +38,7 @@ jobs:
     - name: Set up Python
       uses: actions/setup-python@v4
       with:
-        python-version: 3.9
+        python-version: 3.11
 
     - name: Install dependencies
       run: |
@@ -58,7 +58,7 @@ jobs:
       fail-fast: false
       matrix:
         os: ["ubuntu-22.04", "windows-2022"]
-        python: [3.9]
+        python: [3.11]
 
     name: Tests (${{ matrix.os }}, Python ${{ matrix.python }})
     runs-on: ${{ matrix.os }}
@@ -91,20 +91,20 @@ jobs:
           pip freeze
 
       - name: Test with pytest
-        if: ${{ !(startsWith(matrix.os, 'ubuntu') && matrix.python == 3.9) }}
+        if: ${{ !(startsWith(matrix.os, 'ubuntu') && matrix.python == 3.11) }}
         shell: bash -l {0}
         run: |
           pytest
 
       - name: Test with pytest (with coverage)
-        if: ${{ startsWith(matrix.os, 'ubuntu') && matrix.python == 3.9 }}
+        if: ${{ startsWith(matrix.os, 'ubuntu') && matrix.python == 3.11 }}
         shell: bash -l {0}
         run: |
           pytest --cov=sleap_roots --cov-report=xml tests/
 
       - name: Upload coverage
         uses: codecov/codecov-action@v4
-        if: ${{ startsWith(matrix.os, 'ubuntu') && matrix.python == 3.9 }}
+        if: ${{ startsWith(matrix.os, 'ubuntu') && matrix.python == 3.11 }}
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
           fail_ci_if_error: true