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gastrulation

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SilasBoyeNissen / Theoretical-tool-bridging-cell-polarities-with-development-of-robust-morphologies

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"Theoretical tool bridging cell polarities with development of robust morphologies" published in eLife (2018)

toolbox elife pcp developmental-biology morphogenesis symmetry-breaking organogenesis gastrulation convergent-extension metastable-topologies tubulogenesis apical-basal-polarity cell-polarity planar-cell-polarity cell-adhesion in-silico-model sea-urchin voronoi-approach biological-shapes organoid-growth
  • Updated Oct 22, 2020
  • MATLAB

orestasdulinskas / gastrulation-scRNAseq

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Single-cell RNA-seq analysis of mouse gastrulation using data from Argelaguet and Pijuan-Sala. The project includes preprocessing, SCVI-based dataset integration, differential gene expression analysis, and a no-code interface powered by Chatmol for natural language interaction with the pipeline.

python bioinformatics deep-learning gpu-acceleration dimensionality-reduction scrna-seq data-integration llama single-cell differential-expression umap developmental-biology no-code embryogenesis scanpy gastrulation anndata scvi-tools mouse-development
  • Updated Jun 1, 2025
  • Jupyter Notebook

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